VRN1 (Arabidopsis lyrata)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 fgenesh2_kg.3__2116__AT3G18990.1 T019208_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		1.000 1.000
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__2116__AT3G18990.1 B3 5 98
fgenesh2_kg.3__2116__AT3G18990.1 B3 244 338

Links

Other B3 family TFs
Other Arabidopsis lyrata TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POU4F1 Homo sapiens ENSG00000152192 D 0.000
ENSAMEG00000002442 Ailuropoda melanoleuca ENSAMEG00000002442 I 0.000
ENSPFOG00000015497 Poecilia formosa ENSPFOG00000015497 I 0.000
POU4F1 Pan troglodytes ENSPTRG00000031154 I 0.000
ENSSTOG00000026743 Ictidomys tridecemlineatus ENSSTOG00000026743 I 0.000
pou4f1 Tetraodon nigroviridis ENSTNIG00000009466 I 0.000
pou4f1 Takifugu rubripes ENSTRUG00000000007 I 0.000
POU4F1 Tursiops truncatus ENSTTRG00000004846 I 0.000
ENSBTAP00000025049-D3 Bos grunniens ENSBTAP00000025049-D3 I 0.000
pou4f1 Xenopus tropicalis XB-GENE-853139 I 0.000
ENSPANG00000018120 Papio anubis ENSPANG00000018120 I 0.000
pou4f1 Oryzias latipes ENSORLG00000004454 I 0.000
ENSCPOG00000025218 Cavia porcellus ENSCPOG00000025218 I 0.000
ENSLACG00000016265 Latimeria chalumnae ENSLACG00000016265 I 0.000
POU4F1 Microcebus murinus ENSMICG00000011538 I 0.000
POU4F1 Monodelphis domestica ENSMODG00000001515 I 0.000
Pou4f1 Mus musculus ENSMUSG00000048349 I 0.000
POU4F1 Oryctolagus cuniculus ENSOCUG00000006718 I 0.000
ENSONIG00000003241 Oreochromis niloticus ENSONIG00000003241 I 0.000
POU4F1 Ochotona princeps ENSOPRG00000004279 I 0.000
pou4f1.L Xenopus laevis XB-GENE-866464 I 0.000