MTR_1g064430 (Medicago truncatula)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 MTR_1g064430 T019742_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.907 0.907
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH42230 B3 142 244
KEH42231 B3 129 231

Links

Other B3 family TFs
Other Medicago truncatula TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ca_17136 Cicer arietinum Ca_17136 I 0.990
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.959
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.959
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.948
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.948
PK17007.1 Cannabis sativa PK17007.1 I 0.948
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.948
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.948
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.948
Pm030120 Prunus mume Pm030120 I 0.948
Cla018574 Citrullus lanatus Cla018574 I 0.948
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.948
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.948
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.948
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.948
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.938
TCM_022163 Theobroma cacao TCM_022163 I 0.938
30078.m002329 Ricinus communis 30078.m002329 I 0.938
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.938
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.938
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.938
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.938
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.938
TCM_042067 Theobroma cacao TCM_042067 I 0.928
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.928
MDP0000221322 Malus domestica MDP0000221322 I 0.928
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.928
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.928
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.928
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.928
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.928
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.928
Pm018533 Prunus mume Pm018533 I 0.928
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.928
MDP0000131481 Malus domestica MDP0000131481 I 0.928
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.928
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.928
Pm031275 Prunus mume Pm031275 I 0.928
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.928
mgf005300m Mimulus guttatus mgf005300m I 0.928
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.928
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.928
mgf016139m Mimulus guttatus mgf016139m I 0.927
MDP0000750392 Malus domestica MDP0000750392 I 0.918
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.918
TCM_043157 Theobroma cacao TCM_043157 I 0.918
27538.m000327 Ricinus communis 27538.m000327 I 0.918
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.918
Bra011162 Brassica rapa Bra011162 I 0.918
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.918
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.918
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.918
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.907
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.907
Si005991m.g Setaria italica Si005991m.g I 0.907
Si034525m.g Setaria italica Si034525m.g I 0.907
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.907
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.907
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.907
ARF18 Oryza sativa OS06G0685700 I 0.907
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.907
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.907
Bo1g014600 Brassica oleracea Bo1g014600 I 0.907
Bra024109 Brassica rapa Bra024109 I 0.907
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.907
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.907
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.907
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.907
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.907
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.907
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.907
ARF16 Arabidopsis thaliana AT4G30080 D 0.907
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.907
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.907
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.907
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.907
OB06G32920 Oryza brachyantha OB06G32920 I 0.907
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.907
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.907
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.907
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.907
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.907
OBART06G25230 Oryza barthii OBART06G25230 I 0.907
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.907
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.897
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.897
mgf024607m Mimulus guttatus mgf024607m I 0.897
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.897
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.897
F775_32978 Aegilops tauschii F775_32978 I 0.897
Bo7g114200 Brassica oleracea Bo7g114200 I 0.897
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.897
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.897
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.897
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.897
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.897
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.897
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.897
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.897
OB10G20590 Oryza brachyantha OB10G20590 I 0.897
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.897
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.897
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.896
ARF10 Arabidopsis thaliana AT2G28350 I 0.896
Bra011955 Brassica rapa Bra011955 I 0.896
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.895
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.887
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.887
Cla013979 Citrullus lanatus Cla013979 I 0.887
Ca_26121 Cicer arietinum Ca_26121 I 0.887
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.887
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.887
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.887
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.887
mgf000336m Mimulus guttatus mgf000336m I 0.887
OBART10G13410 Oryza barthii OBART10G13410 I 0.887
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.887
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.887
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.887
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.887
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.887
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.887
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.887
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.887
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.887
ARF22 Oryza sativa OS10G0479900 I 0.887
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.887
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.887
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.887
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.887
Si016509m.g Setaria italica Si016509m.g I 0.885
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.885
Ca_02541 Cicer arietinum Ca_02541 I 0.885
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.885
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.885
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.884
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.876
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.876
Bo4g071620 Brassica oleracea Bo4g071620 I 0.876
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.876
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.866
ARF8 Oryza sativa OS02G0628600 I 0.866
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.866
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.866
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.866
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.866
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.866
PK13064.1 Cannabis sativa PK13064.1 I 0.866
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.866
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.866
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.866
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.866
27494.m000045 Ricinus communis 27494.m000045 I 0.866
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.865
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.865
OB02G32150 Oryza brachyantha OB02G32150 I 0.865
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.856
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.856
Cla008883 Citrullus lanatus Cla008883 I 0.856
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.856
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.856
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.854
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.845
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.845
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.845
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.845
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.844
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.835
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.835
Ca_08488 Cicer arietinum Ca_08488 I 0.835
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.833
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.833
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.827
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.825
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.825
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.825
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.825
PK13393.1 Cannabis sativa PK13393.1 I 0.816
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.812
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.812
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.806
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.804
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.804
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.786
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.776
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.773
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.773
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.773
OBART04G18910 Oryza barthii OBART04G18910 I 0.773
ARF10 Oryza indica BGIOSGA016767 I 0.773
OB04G25990 Oryza brachyantha OB04G25990 I 0.773
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.773
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.773
OS04G0519700 Oryza sativa OS04G0519700 I 0.773
Si009541m.g Setaria italica Si009541m.g I 0.773
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.768
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.763
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.763
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.753
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.742
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.740
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.739
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.732
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.732
Ca_17624 Cicer arietinum Ca_17624 I 0.722
OBART02G24860 Oryza barthii OBART02G24860 I 0.720
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.711
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.711
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.710
TCM_035002 Theobroma cacao TCM_035002 I 0.701
PK10136.1 Cannabis sativa PK10136.1 I 0.701