MTR_4g058930 (Medicago truncatula)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 MTR_4g058930 T019806_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.907 0.907
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH30033 B3 109 211
KEH30034 B3 109 211

Links

Other B3 family TFs
Other Medicago truncatula TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ca_26121 Cicer arietinum Ca_26121 I 0.979
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.959
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.959
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.959
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.948
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.948
Ca_02541 Cicer arietinum Ca_02541 I 0.948
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.938
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.938
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.938
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.928
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.928
TCM_042067 Theobroma cacao TCM_042067 I 0.928
MDP0000221322 Malus domestica MDP0000221322 I 0.928
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.928
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.928
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.928
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.928
MDP0000131481 Malus domestica MDP0000131481 I 0.928
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.928
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.928
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.928
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.928
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.928
27538.m000327 Ricinus communis 27538.m000327 I 0.928
Pm031275 Prunus mume Pm031275 I 0.928
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.928
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.927
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.927
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.918
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.918
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.918
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.918
TCM_043157 Theobroma cacao TCM_043157 I 0.918
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.918
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.918
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.918
Si034525m.g Setaria italica Si034525m.g I 0.918
Bra011162 Brassica rapa Bra011162 I 0.918
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.918
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.918
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.917
F775_32978 Aegilops tauschii F775_32978 I 0.917
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.907
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.907
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.907
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.907
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.907
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.907
Pm030120 Prunus mume Pm030120 I 0.907
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.907
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.907
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.907
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.907
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.907
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.907
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.907
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.907
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.907
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.907
ARF16 Arabidopsis thaliana AT4G30080 D 0.907
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.907
PK17007.1 Cannabis sativa PK17007.1 I 0.907
Bo1g014600 Brassica oleracea Bo1g014600 I 0.907
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.907
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.907
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.907
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.907
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.907
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.907
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.907
Cla018574 Citrullus lanatus Cla018574 I 0.907
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.907
OB10G20590 Oryza brachyantha OB10G20590 I 0.907
Bo4g071620 Brassica oleracea Bo4g071620 I 0.906
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.897
Bo7g114200 Brassica oleracea Bo7g114200 I 0.897
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.897
OBART06G25230 Oryza barthii OBART06G25230 I 0.897
Pm018533 Prunus mume Pm018533 I 0.897
TCM_022163 Theobroma cacao TCM_022163 I 0.897
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.897
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.897
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.897
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.897
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.897
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.897
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.897
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.897
Si005991m.g Setaria italica Si005991m.g I 0.897
OB06G32920 Oryza brachyantha OB06G32920 I 0.897
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.897
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.897
OBART10G13410 Oryza barthii OBART10G13410 I 0.897
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.897
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.897
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.897
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.897
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.897
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.897
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.897
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.897
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.897
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.897
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.897
mgf024607m Mimulus guttatus mgf024607m I 0.897
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.897
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.897
30078.m002329 Ricinus communis 30078.m002329 I 0.897
ARF22 Oryza sativa OS10G0479900 I 0.897
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.897
ARF18 Oryza sativa OS06G0685700 I 0.897
mgf016139m Mimulus guttatus mgf016139m I 0.896
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.896
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.896
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.896
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.896
Bra011955 Brassica rapa Bra011955 I 0.896
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.896
OB02G32150 Oryza brachyantha OB02G32150 I 0.896
ARF10 Arabidopsis thaliana AT2G28350 I 0.896
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.896
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.896
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.896
Si016509m.g Setaria italica Si016509m.g I 0.896
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.895
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.895
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.887
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.887
Cla013979 Citrullus lanatus Cla013979 I 0.887
Bra024109 Brassica rapa Bra024109 I 0.887
Ca_17136 Cicer arietinum Ca_17136 I 0.887
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.887
MDP0000750392 Malus domestica MDP0000750392 I 0.887
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.887
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.887
mgf005300m Mimulus guttatus mgf005300m I 0.887
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.887
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.876
ARF8 Oryza sativa OS02G0628600 I 0.876
PK13064.1 Cannabis sativa PK13064.1 I 0.876
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.876
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.876
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.876
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.876
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.876
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.876
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.876
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.876
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.876
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.876
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.876
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.876
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.876
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.875
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.875
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.875
27494.m000045 Ricinus communis 27494.m000045 I 0.866
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.866
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.866
Cla008883 Citrullus lanatus Cla008883 I 0.866
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.865
mgf000336m Mimulus guttatus mgf000336m I 0.856
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.856
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.856
Ca_08488 Cicer arietinum Ca_08488 I 0.846
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.845
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.844
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.844
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.835
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.835
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.835
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.835
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.835
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.835
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.827
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.823
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.823
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.819
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.816
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.814
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.814
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.812
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.806
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.797
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.794
OS04G0519700 Oryza sativa OS04G0519700 I 0.794
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.794
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.794
ARF10 Oryza indica BGIOSGA016767 I 0.794
Si009541m.g Setaria italica Si009541m.g I 0.794
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.794
OBART04G18910 Oryza barthii OBART04G18910 I 0.794
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.794
PK13393.1 Cannabis sativa PK13393.1 I 0.786
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.763
OB04G25990 Oryza brachyantha OB04G25990 I 0.763
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.761
TCM_029792 Theobroma cacao TCM_029792 I 0.755
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.753
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.742
TCM_035002 Theobroma cacao TCM_035002 I 0.742
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.740
OBART02G24860 Oryza barthii OBART02G24860 I 0.733
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.732
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.732
Cla022413 Citrullus lanatus Cla022413 I 0.732
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.732
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.732
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.732
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.732
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.722
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.722
29908.m005953 Ricinus communis 29908.m005953 I 0.722
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.722
Pm019126 Prunus mume Pm019126 I 0.722
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.722
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.722
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.711
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.711
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.711
Ca_17624 Cicer arietinum Ca_17624 I 0.711
MDP0000256621 Malus domestica MDP0000256621 I 0.711
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.711
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.710
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.707
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.704
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.701
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.701
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.701