PGSC0003DMG400005856 (Solanum tuberosum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 PGSC0003DMG400005856 T020702_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400015010 B3 49 155

Links

Other B3 family TFs
Other Solanum tuberosum TFs

267 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 1.000
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.990
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.980
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.929
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.921
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.921
Pm024248 Prunus mume Pm024248 I 0.921
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.921
TCM_015590 Theobroma cacao TCM_015590 I 0.911
TCM_005014 Theobroma cacao TCM_005014 I 0.911
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.911
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.911
30076.m004471 Ricinus communis 30076.m004471 I 0.911
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.911
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.911
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.901
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.901
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.901
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.901
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.901
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.901
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.901
PK11025.1 Cannabis sativa PK11025.1 I 0.901
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.901
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.901
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.891
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.891
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.891
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.891
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.891
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.881
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.881
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.881
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.881
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.881
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.881
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.881
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.881
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.871
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.871
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.871
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.870
mgf023769m Mimulus guttatus mgf023769m N 0.861
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.861
30068.m002615 Ricinus communis 30068.m002615 I 0.861
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.861
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.861
PK21157.1 Cannabis sativa PK21157.1 I 0.851
OB03G11610 Oryza brachyantha OB03G11610 N 0.851
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.851
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.851
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.851
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.851
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.851
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.851
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.851
Pm028725 Prunus mume Pm028725 N 0.842
Ca_01368 Cicer arietinum Ca_01368 I 0.842
Si036864m.g Setaria italica Si036864m.g N 0.842
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.842
OS03G0120900 Oryza sativa OS03G0120900 N 0.842
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.842
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.842
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.842
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.842
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.842
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.842
OBART03G01650 Oryza barthii OBART03G01650 N 0.842
OB02G35380 Oryza brachyantha OB02G35380 I 0.842
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.842
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.842
Bra040478 Brassica rapa Bra040478 I 0.842
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.842
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.832
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.832
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.832
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.832
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.832
Bra004501 Brassica rapa Bra004501 N 0.832
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.832
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.832
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.832
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.832
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.832
Bo4g197410 Brassica oleracea Bo4g197410 I 0.832
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.832
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.832
Bo3g039420 Brassica oleracea Bo3g039420 N 0.832
NGA1 Arabidopsis thaliana AT2G46870 N 0.832
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.832
NGA3 Arabidopsis thaliana AT1G01030 N 0.832
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.832
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.832
Bo4g006900 Brassica oleracea Bo4g006900 N 0.822
MDP0000138163 Malus domestica MDP0000138163 N 0.822
Bra030497 Brassica rapa Bra030497 N 0.822
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.822
Bo3g001110 Brassica oleracea Bo3g001110 N 0.822
Bo5g002790 Brassica oleracea Bo5g002790 N 0.822
Bra000434 Brassica rapa Bra000434 N 0.822
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.822
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.822
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.818
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.812
Bo6g079210 Brassica oleracea Bo6g079210 N 0.812
Cla006845 Citrullus lanatus Cla006845 I 0.812
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.812
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.812
Bo8g097490 Brassica oleracea Bo8g097490 N 0.812
Bra007646 Brassica rapa Bra007646 N 0.812
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.812
Bra014415 Brassica rapa Bra014415 N 0.812
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.812
Bra003482 Brassica rapa Bra003482 N 0.812
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.812
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.812
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.812
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.812
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.812
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.812
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.812
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.812
OBART02G28100 Oryza barthii OBART02G28100 N 0.812
OBART04G22880 Oryza barthii OBART04G22880 I 0.812
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.812
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.812
OS02G0683500 Oryza sativa OS02G0683500 N 0.812
OS04G0581400 Oryza sativa OS04G0581400 I 0.812
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.812
Cla014858 Citrullus lanatus Cla014858 N 0.808
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.802
Bra033294 Brassica rapa Bra033294 N 0.802
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.802
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.802
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.802
Bo4g099000 Brassica oleracea Bo4g099000 N 0.802
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.802
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.802
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.802
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.802
Cla005055 Citrullus lanatus Cla005055 N 0.802
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.802
Si011823m.g Setaria italica Si011823m.g N 0.802
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.802
NGA2 Arabidopsis thaliana AT3G61970 N 0.802
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.792
MDP0000288808 Malus domestica MDP0000288808 N 0.792
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.792
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.792
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.792
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.792
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.792
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.772
Si020241m.g Setaria italica Si020241m.g N 0.772
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.772
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.768
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.762
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.762
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.762
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.762
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.762
OS10G0537100 Oryza sativa OS10G0537100 N 0.762
OBART10G17010 Oryza barthii OBART10G17010 N 0.762
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.762
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.762
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.752
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.752
TCM_022729 Theobroma cacao TCM_022729 N 0.747
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.747
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.745
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.743
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.743
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.743
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.743
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.737
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.737
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.736
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.733
mgf019085m Mimulus guttatus mgf019085m N 0.733
F775_04153 Aegilops tauschii F775_04153 N 0.733
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.733
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.733
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.733
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.733
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.733
Si039972m.g Setaria italica Si039972m.g N 0.733
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.733
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.733
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.733
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.733
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.733
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.733
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.733
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.723
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.723
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.723
PK04952.1 Cannabis sativa PK04952.1 I 0.723
Si027632m.g Setaria italica Si027632m.g N 0.723
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.723
OB12G13420 Oryza brachyantha OB12G13420 N 0.723
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.723
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.723
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.723
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.723
mgf023686m Mimulus guttatus mgf023686m I 0.723
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.723
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.723
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.723
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.723
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.723
Ca_25633 Cicer arietinum Ca_25633 I 0.723
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.723
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.722
OB10G24100 Oryza brachyantha OB10G24100 N 0.718
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.714
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.714
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.713
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.713
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.713
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.713
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.713
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.713
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.713
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.713
Bo9g176470 Brassica oleracea Bo9g176470 N 0.713
Bo3g064320 Brassica oleracea Bo3g064320 N 0.713
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.713
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.713
Bra001411 Brassica rapa Bra001411 N 0.713
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.713
Bra017262 Brassica rapa Bra017262 N 0.713
MLOC_47091 Hordeum vulgare MLOC_47091 N 0.713
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.713
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.713
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.713
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.713
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.713
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.713
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.713
ARF31 Arabidopsis thaliana AT2G36080 N 0.713
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.713
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.713
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.713
Cla017937 Citrullus lanatus Cla017937 I 0.713
Bo3g003800 Brassica oleracea Bo3g003800 N 0.713
Bo01079s020 Brassica oleracea Bo01079s020 N 0.713
30032.m000462 Ricinus communis 30032.m000462 N 0.713
GSMUA_Achr4G30170_001 Musa acuminata GSMUA_Achr4G30170_001 N 0.707
Bo4g035110 Brassica oleracea Bo4g035110 N 0.703
Bra005301 Brassica rapa Bra005301 N 0.703
Bra005886 Brassica rapa Bra005886 N 0.703
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.703
MDP0000229742 Malus domestica MDP0000229742 N 0.703
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.703
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.703
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.703
Ca_00826 Cicer arietinum Ca_00826 N 0.703
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.703
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.703
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.703
OB05G32250 Oryza brachyantha OB05G32250 I 0.703
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.703
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.703
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.700
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.700