PGSC0003DMG400008081 (Solanum tuberosum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 PGSC0003DMG400008081 T020709_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.885 0.885
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400020874 B3 113 215

Links

Other B3 family TFs
Other Solanum tuberosum TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.969
Ca_02541 Cicer arietinum Ca_02541 I 0.948
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.938
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.938
TCM_042067 Theobroma cacao TCM_042067 I 0.938
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.938
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.938
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.938
mgf016139m Mimulus guttatus mgf016139m I 0.938
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.938
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.927
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.927
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.927
Ca_26121 Cicer arietinum Ca_26121 I 0.927
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.927
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.927
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.927
Pm031275 Prunus mume Pm031275 I 0.927
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.927
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.927
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.927
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.927
Bo4g071620 Brassica oleracea Bo4g071620 I 0.927
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.927
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.927
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.927
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.927
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.927
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.927
MDP0000221322 Malus domestica MDP0000221322 I 0.927
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.927
Si034525m.g Setaria italica Si034525m.g I 0.927
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.927
MDP0000131481 Malus domestica MDP0000131481 I 0.927
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.917
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.917
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.917
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.917
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.917
OB10G20590 Oryza brachyantha OB10G20590 I 0.917
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.917
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.917
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.917
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.917
Cla018574 Citrullus lanatus Cla018574 I 0.917
Pm030120 Prunus mume Pm030120 I 0.917
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.917
27538.m000327 Ricinus communis 27538.m000327 I 0.917
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.917
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.917
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.917
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.917
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.917
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.917
F775_32978 Aegilops tauschii F775_32978 I 0.917
Bra011955 Brassica rapa Bra011955 I 0.917
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.917
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.917
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.917
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.917
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.917
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.917
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.917
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.917
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.917
PK17007.1 Cannabis sativa PK17007.1 I 0.917
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.917
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.917
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.906
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.906
ARF22 Oryza sativa OS10G0479900 I 0.906
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.906
TCM_022163 Theobroma cacao TCM_022163 I 0.906
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.906
30078.m002329 Ricinus communis 30078.m002329 I 0.906
ARF18 Oryza sativa OS06G0685700 I 0.906
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.906
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.906
Si005991m.g Setaria italica Si005991m.g I 0.906
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.906
TCM_043157 Theobroma cacao TCM_043157 I 0.906
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.906
Si016509m.g Setaria italica Si016509m.g I 0.906
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.906
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.906
OB06G32920 Oryza brachyantha OB06G32920 I 0.906
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.906
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.906
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.906
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.906
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.906
OBART06G25230 Oryza barthii OBART06G25230 I 0.906
OB02G32150 Oryza brachyantha OB02G32150 I 0.906
OBART10G13410 Oryza barthii OBART10G13410 I 0.906
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.906
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.906
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.906
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.906
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.906
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.906
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.906
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.906
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.906
ARF10 Arabidopsis thaliana AT2G28350 I 0.906
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.896
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.896
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.896
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.896
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.896
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.896
PK13064.1 Cannabis sativa PK13064.1 I 0.896
mgf005300m Mimulus guttatus mgf005300m I 0.896
ARF8 Oryza sativa OS02G0628600 I 0.896
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.896
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.896
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.896
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.896
Cla008883 Citrullus lanatus Cla008883 I 0.896
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.896
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.896
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.896
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.896
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.896
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.896
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.896
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.896
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.896
Bra011162 Brassica rapa Bra011162 I 0.896
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.896
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.896
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.896
ARF16 Arabidopsis thaliana AT4G30080 D 0.885
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.885
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.885
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.885
Bo1g014600 Brassica oleracea Bo1g014600 I 0.885
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.885
MDP0000750392 Malus domestica MDP0000750392 I 0.885
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.885
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.885
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.885
mgf000336m Mimulus guttatus mgf000336m I 0.885
Ca_17136 Cicer arietinum Ca_17136 I 0.885
Pm018533 Prunus mume Pm018533 I 0.885
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.885
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.885
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.885
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.875
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.875
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.875
mgf024607m Mimulus guttatus mgf024607m I 0.875
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.875
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.875
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.875
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.875
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.875
Bo7g114200 Brassica oleracea Bo7g114200 I 0.875
27494.m000045 Ricinus communis 27494.m000045 I 0.875
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.865
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.865
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.865
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.865
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.865
Cla013979 Citrullus lanatus Cla013979 I 0.865
Bra024109 Brassica rapa Bra024109 I 0.865
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.865
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.865
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.854
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.854
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.854
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.844
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.844
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.844
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.833
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.833
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.833
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.833
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.833
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.823
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.812
PK13393.1 Cannabis sativa PK13393.1 I 0.812
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.802
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.792
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.792
ARF10 Oryza indica BGIOSGA016767 I 0.792
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.792
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.792
OS04G0519700 Oryza sativa OS04G0519700 I 0.792
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.792
OBART04G18910 Oryza barthii OBART04G18910 I 0.792
Si009541m.g Setaria italica Si009541m.g I 0.781
Ca_08488 Cicer arietinum Ca_08488 I 0.771
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.771
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.760
OB04G25990 Oryza brachyantha OB04G25990 I 0.760
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.760
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.760
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.760
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.740
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.729
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.729
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.729
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.719
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.719
Ca_17624 Cicer arietinum Ca_17624 I 0.719
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.719
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.719
29908.m005953 Ricinus communis 29908.m005953 I 0.719
TCM_035002 Theobroma cacao TCM_035002 I 0.719
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.719
PK10136.1 Cannabis sativa PK10136.1 I 0.719
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.719
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.719
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.708
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.708
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.708
Cla022413 Citrullus lanatus Cla022413 I 0.708
Pm019126 Prunus mume Pm019126 I 0.708
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.708
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.708
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.708
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.708
MDP0000256621 Malus domestica MDP0000256621 I 0.701