CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG401018664
(
Solanum tuberosum
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
PGSC0003DMG401018664
T020789_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN
NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.836
0.836
ARF3
M00852_2.00
Arabidopsis thaliana
NKGTYBNN
NNVRACMN
PBM
Franco-Zorrilla et al.(2014)
ETTIN
0.721
0.721
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.745
0.745
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400048031
B3
10
59
QQAHEGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAT
PGSC0003DMT400048033
B3
127
194
FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQTPPCQELIARDLHDIEWKFRHIFRGKLRRILSLL
PGSC0003DMT400048034
B3
31
133
FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQTPPCQELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAT
PGSC0003DMT400048035
B3
8
55
GIFSEPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAT
PGSC0003DMT400048036
B3
8
55
GIFSEPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAT
Links
Other
B3
family TFs
Other
Solanum tuberosum
TFs
575 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy