CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0004s15400
(
Populus trichocarpa
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
POPTR_0004s15400
T020842_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VRN1
M06704_2.00
Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW
Dap-seq
OMalley et al.(2016)
VRN1_col_a
0.720
0.720
VRN1
M06705_2.00
Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN
Dap-seq
OMalley et al.(2016)
VRN1_colamp_a
0.720
0.720
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0004s15400.1
B3
5
98
FFQKLILPGTIREKRLRIPDNFVKKFGHDLLGFARLIVPGGHVSRIGLIKADEKLWFHDGWQQFVERFAIHIGYFLIFQYEGNAIFNVHIFNLP
POPTR_0004s15400.1
B3
277
371
CRVVLRPSYLYRGCIMYLPSGFAEKNLNGLSGFMKLQLPDGKQWPVRCLYRGGRAKFSQGWYEFTLENNLGEGDVCVFELLKSRDVVLKVTVFRV
Links
Other
B3
family TFs
Other
Populus trichocarpa
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy