POPTR_0004s15400 (Populus trichocarpa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 POPTR_0004s15400 T020842_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VRN1
M06704_2.00
Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN

NAMAAAAAAAAAAAAAAAAAAAAAAAWWW
Dap-seq
OMalley et al.(2016)
VRN1_col_a
0.720 0.720
VRN1
M06705_2.00
Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB

VMMAAAAAAAAAAAANVWN
Dap-seq
OMalley et al.(2016)
VRN1_colamp_a
0.720 0.720
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s15400.1 B3 5 98
POPTR_0004s15400.1 B3 277 371

Links

Other B3 family TFs
Other Populus trichocarpa TFs

Invalid Input OrderBy

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action