TCM_006971 (Theobroma cacao)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 TCM_006971 T021501_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VRN1
M06704_2.00
Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN

NAMAAAAAAAAAAAAAAAAAAAAAAAWWW
Dap-seq
OMalley et al.(2016)
VRN1_col_a
0.819 0.819
VRN1
M06705_2.00
Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB

VMMAAAAAAAAAAAANVWN
Dap-seq
OMalley et al.(2016)
VRN1_colamp_a
0.819 0.819
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX98140 B3 5 98
EOX98140 B3 200 294
EOX98141 B3 5 97
EOX98141 B3 245 339
EOX98142 B3 5 97
EOX98142 B3 239 333
EOX98143 B3 1 46
EOX98143 B3 142 236

Links

Other B3 family TFs
Other Theobroma cacao TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.957
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.931
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.931
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.905
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.830
VRN1 Arabidopsis thaliana AT3G18990 D 0.819
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.819
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.819
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.819
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.819
Bo1g115980 Brassica oleracea Bo1g115980 I 0.814
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.814
29851.m002498 Ricinus communis 29851.m002498 I 0.809
cassava29880.valid.m1 Manihot esculenta cassava29880.valid.m1 I 0.809
Bra037544 Brassica rapa Bra037544 I 0.809
Bo5g116790 Brassica oleracea Bo5g116790 I 0.804
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.798
orange1.1g016655m.g Citrus sinensis orange1.1g016655m.g I 0.798
Ciclev10028642m.g Citrus clementina Ciclev10028642m.g I 0.798
PK10791.1 Cannabis sativa PK10791.1 I 0.798
POPTR_0009s11170 Populus trichocarpa POPTR_0009s11170 I 0.787
Bra022376 Brassica rapa Bra022376 I 0.787
Bo3g071890 Brassica oleracea Bo3g071890 I 0.782
MDP0000238744 Malus domestica MDP0000238744 N 0.782
MDP0000555456 Malus domestica MDP0000555456 N 0.777
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.777
SapurV1A.2089s0010 Salix purpurea SapurV1A.2089s0010 I 0.771
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.767
SapurV1A.0090s0340 Salix purpurea SapurV1A.0090s0340 I 0.767
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I 0.761
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I 0.757
Pm021537 Prunus mume Pm021537 N 0.750
GLYMA20G01130 Glycine max GLYMA20G01130 N 0.750
evm.TU.supercontig_62.76 Carica papaya evm.TU.supercontig_62.76 I 0.750
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.745
Lus10012041.g Linum usitatissimum Lus10012041.g N 0.728
Bra001729 Brassica rapa Bra001729 I 0.723
MTR_1g034240 Medicago truncatula MTR_1g034240 N 0.720
Ca_14825 Cicer arietinum Ca_14825 N 0.718
GLYMA12G05250 Glycine max GLYMA12G05250 N 0.714
Cla010445 Citrullus lanatus Cla010445 I 0.707
GLYMA11G13210 Glycine max GLYMA11G13210 N 0.707