TCM_043157 (Theobroma cacao)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 TCM_043157 T021555_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.969 0.969
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY18662 B3 121 223

Links

Other B3 family TFs
Other Theobroma cacao TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARF16 Arabidopsis thaliana AT4G30080 D 0.969
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.866
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.876
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.711
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.918
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.938
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.918
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.897
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.959
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.711
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.938
30078.m002329 Ricinus communis 30078.m002329 I 0.928
29908.m005953 Ricinus communis 29908.m005953 I 0.711
27538.m000327 Ricinus communis 27538.m000327 I 0.918
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.845
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.854
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.938
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.906
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.969
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.906
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.969
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.969
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.906
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.938
mgf024607m Mimulus guttatus mgf024607m I 0.948
mgf016139m Mimulus guttatus mgf016139m I 0.906
mgf005300m Mimulus guttatus mgf005300m I 0.918
mgf000336m Mimulus guttatus mgf000336m I 0.856
27494.m000045 Ricinus communis 27494.m000045 I 0.907
Pm031275 Prunus mume Pm031275 I 0.928
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.928
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.819
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.854
TCM_042067 Theobroma cacao TCM_042067 I 0.928
TCM_035002 Theobroma cacao TCM_035002 I 0.753
TCM_029792 Theobroma cacao TCM_029792 I 0.717
TCM_022163 Theobroma cacao TCM_022163 I 0.928
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.918
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.784
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.938
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.765
Si034525m.g Setaria italica Si034525m.g I 0.938
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.918
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.928
Pm030120 Prunus mume Pm030120 I 0.938
Pm019126 Prunus mume Pm019126 I 0.711
Pm018533 Prunus mume Pm018533 I 0.938
Cla022413 Citrullus lanatus Cla022413 I 0.742
Cla018574 Citrullus lanatus Cla018574 I 0.938
Cla013979 Citrullus lanatus Cla013979 I 0.928
Cla008883 Citrullus lanatus Cla008883 I 0.876
Ca_26121 Cicer arietinum Ca_26121 I 0.918
Ca_17624 Cicer arietinum Ca_17624 I 0.732
Ca_17136 Cicer arietinum Ca_17136 I 0.907
Ca_08488 Cicer arietinum Ca_08488 I 0.879
Ca_02541 Cicer arietinum Ca_02541 I 0.938
Si016509m.g Setaria italica Si016509m.g I 0.885
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.979
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.908
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.866
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.897
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.732
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.938
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.833
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.711
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.916
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.833
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.928
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.979
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.938
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.866
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.938
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.711
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.812
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.938
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.711
PK17007.1 Cannabis sativa PK17007.1 I 0.948
PK13393.1 Cannabis sativa PK13393.1 I 0.827
PK13064.1 Cannabis sativa PK13064.1 I 0.907
PK10136.1 Cannabis sativa PK10136.1 I 0.714
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.969
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.906
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.897
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.948
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.959
MDP0000750392 Malus domestica MDP0000750392 I 0.918
MDP0000256621 Malus domestica MDP0000256621 I 0.701
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.928
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.885
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.918
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.928
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.938
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.704
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.918
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.969
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.722
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.918
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.928
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.948
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.897
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.722
MDP0000221322 Malus domestica MDP0000221322 I 0.938
MDP0000131481 Malus domestica MDP0000131481 I 0.938
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.887
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.938
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.887
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.906
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.938
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.896
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.856
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.938
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.918
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.722
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.714
Si009541m.g Setaria italica Si009541m.g I 0.784
OBART02G24860 Oryza barthii OBART02G24860 I 0.733
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.928
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.866
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.835
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.875
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.742
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.918
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.731
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.948
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.928
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.856
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.928
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.928
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.938
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.875
OB10G20590 Oryza brachyantha OB10G20590 I 0.928
OB06G32920 Oryza brachyantha OB06G32920 I 0.938
OB04G25990 Oryza brachyantha OB04G25990 I 0.784
OB02G32150 Oryza brachyantha OB02G32150 I 0.865
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.763
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.750
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.918
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.918
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.928
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.918
MTR_0041s0120 Medicago truncatula MTR_0041s0120 I 0.762
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.763
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.885
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.918
Bra024109 Brassica rapa Bra024109 I 0.948
Bra011955 Brassica rapa Bra011955 I 0.906
Bra011162 Brassica rapa Bra011162 I 0.979
Bo7g114200 Brassica oleracea Bo7g114200 I 0.959
Bo4g071620 Brassica oleracea Bo4g071620 I 0.896
Bo1g014600 Brassica oleracea Bo1g014600 I 0.969
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.918
ARF10 Oryza indica BGIOSGA016767 I 0.794
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.875
ARF10 Arabidopsis thaliana AT2G28350 I 0.906
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.865
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.837
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.938
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.938
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.897
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.938
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.928
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.948
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.918
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.918
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.928
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.918
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.906
F775_32978 Aegilops tauschii F775_32978 I 0.938
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.740
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.875
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.938
OBART04G18910 Oryza barthii OBART04G18910 I 0.794
Si005991m.g Setaria italica Si005991m.g I 0.938
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.969
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.969
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.876
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.711
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.938
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.701
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.776
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.938
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.906
ARF22 Oryza sativa OS10G0479900 I 0.918
ARF18 Oryza sativa OS06G0685700 I 0.938
OS04G0519700 Oryza sativa OS04G0519700 I 0.794
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.897
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.938
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.814
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.854
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.854
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.814
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.969
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.938
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.885
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.938
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.732
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.948
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.938
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.918
ARF8 Oryza sativa OS02G0628600 I 0.875
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.918
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.875
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.918
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.938
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.794
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.875
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.897
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.865
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.918
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.938
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.875
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.794
OBART10G13410 Oryza barthii OBART10G13410 I 0.918
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.938
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.794
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.938
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.761
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.875
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.918
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.938
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.794
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.875
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.918
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.938
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.794
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.875
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.918
OBART06G25230 Oryza barthii OBART06G25230 I 0.938