VIT_00s1203g00010 (Vitis vinifera)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 VIT_00s1203g00010 T021875_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN

NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.879 0.879
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN

NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.742 0.742
ARF3
M00852_2.00
Arabidopsis thaliana
NKGTYBNN

NNVRACMN
PBM
Franco-Zorrilla et al.(2014)
ETTIN
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_00s1203g00010.t01 B3 31 101

Links

Other B3 family TFs
Other Vitis vinifera TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDK_20s1375001g001 Phoenix dactylifera PDK_20s1375001g001 I 0.727
Cucsa.152170 Cucumis sativus Cucsa.152170 I 0.924
Cucsa.117420 Cucumis sativus Cucsa.117420 I 0.788
cassava32201.m1 Manihot esculenta cassava32201.m1 I 0.939
cassava29104.valid.m1 Manihot esculenta cassava29104.valid.m1 I 0.939
cassava29103.valid.m1 Manihot esculenta cassava29103.valid.m1 I 0.939
cassava2408.valid.m1 Manihot esculenta cassava2408.valid.m1 I 0.939
29739.m003713 Ricinus communis 29739.m003713 I 0.848
29599.m000177 Ricinus communis 29599.m000177 I 0.939
Pm027119 Prunus mume Pm027119 I 0.818
Pm010467 Prunus mume Pm010467 I 0.939
Cla019844 Citrullus lanatus Cla019844 I 0.924
Cla009258 Citrullus lanatus Cla009258 I 0.850
VIT_11s0016g00640 Vitis vinifera VIT_11s0016g00640 I 0.833
ARF6 Vitis vinifera VIT_10s0003g04100 I 0.939
VIT_04s0079g00160 Vitis vinifera VIT_04s0079g00160 I 0.828
Cucsa.173470 Cucumis sativus Cucsa.173470 I 0.864
Carubv10000065m.g Capsella rubella Carubv10000065m.g I 0.803
Ciclev10014200m.g Citrus clementina Ciclev10014200m.g I 0.833
PDK_20s1359912g002 Phoenix dactylifera PDK_20s1359912g002 I 0.766
LjSGA_026543.1 Lotus japonicus LjSGA_026543.1 I 0.881
LjSGA_022975.2 Lotus japonicus LjSGA_022975.2 I 0.962
PK26077.1 Cannabis sativa PK26077.1 I 0.939
SapurV1A.4298s0010 Salix purpurea SapurV1A.4298s0010 I 0.927
SapurV1A.0030s0180 Salix purpurea SapurV1A.0030s0180 I 0.939
Pavir.Gb00274 Panicum virgatum Pavir.Gb00274 I 0.797
orange1.1g002390m.g Citrus sinensis orange1.1g002390m.g I 0.833
MDP0000268306 Malus domestica MDP0000268306 I 0.939
MDP0000143749 Malus domestica MDP0000143749 I 0.803
Lus10024320.g Linum usitatissimum Lus10024320.g I 0.803
Gorai.009G152700 Gossypium raimondii Gorai.009G152700 I 0.939
gene30394-v1.0-hybrid Fragaria vesca gene30394-v1.0-hybrid I 0.939
evm.TU.supercontig_26.25 Carica papaya evm.TU.supercontig_26.25 I 0.788
evm.TU.supercontig_108.15 Carica papaya evm.TU.supercontig_108.15 I 0.841
VIT_03s0167g00010 Vitis vinifera VIT_03s0167g00010 I 0.984
TRIUR3_26420 Triticum urartu TRIUR3_26420 I 0.701
TRIUR3_22410 Triticum urartu TRIUR3_22410 I 0.725
OMERI04G24630 Oryza meridionalis OMERI04G24630 I 0.873
OB06G15720 Oryza brachyantha OB06G15720 I 0.818
OB05G33320 Oryza brachyantha OB05G33320 I 0.712
OB01G35190 Oryza brachyantha OB01G35190 I 0.742
MTR_4g124900 Medicago truncatula MTR_4g124900 I 0.833
MTR_2g043250 Medicago truncatula MTR_2g043250 I 0.803
MLOC_14584 Hordeum vulgare MLOC_14584 I 0.833
GSMUA_Achr6G19850_001 Musa acuminata GSMUA_Achr6G19850_001 I 0.818
GSMUA_Achr11G25770_001 Musa acuminata GSMUA_Achr11G25770_001 I 0.909
GRMZM2G102845 Zea mays GRMZM2G102845 I 0.833
GRMZM2G081158 Zea mays GRMZM2G081158 I 0.909
F775_00614 Aegilops tauschii F775_00614 I 0.714
BRADI1G46602 Brachypodium distachyon BRADI1G46602 I 0.833
Bra021885 Brassica rapa Bra021885 I 0.712
Bra004125 Brassica rapa Bra004125 I 0.833
Bo6g099440 Brassica oleracea Bo6g099440 I 0.833
ORUFI06G26570 Oryza rufipogon ORUFI06G26570 I 0.860
PGSC0003DMG400003771 Solanum tuberosum PGSC0003DMG400003771 I 0.803
Traes_7DS_1948388F8 Triticum aestivum Traes_7DS_1948388F8 I 0.833
Traes_7BS_F44A273F8 Triticum aestivum Traes_7BS_F44A273F8 I 0.833
Traes_7AS_582E3076D Triticum aestivum Traes_7AS_582E3076D I 0.833
Traes_2BL_889C1F272 Triticum aestivum Traes_2BL_889C1F272 I 0.806
Traes_2AL_98457FFEE Triticum aestivum Traes_2AL_98457FFEE I 0.738
TCM_029410 Theobroma cacao TCM_029410 I 0.939
Solyc12g006350.1 Solanum lycopersicum Solyc12g006350.1 I 0.830
Solyc12g006340.1 Solanum lycopersicum Solyc12g006340.1 I 0.786
Solyc04g081240.2 Solanum lycopersicum Solyc04g081240.2 I 0.803
Sb08g021460 Sorghum bicolor Sb08g021460 I 0.909
PRUPE_ppa024354mg Prunus persica PRUPE_ppa024354mg I 0.770
PRUPE_ppa001179mg Prunus persica PRUPE_ppa001179mg I 0.939
PRUPE_ppa000708mg Prunus persica PRUPE_ppa000708mg I 0.818
POPTR_0006s14070 Populus trichocarpa POPTR_0006s14070 I 0.848
PGSC0003DMG401018664 Solanum tuberosum PGSC0003DMG401018664 I 0.803
AMTR_s00007p00267580 Amborella trichopoda AMTR_s00007p00267580 I 0.864
Ca_05876 Cicer arietinum Ca_05876 N 0.708