Cla006845 (Citrullus lanatus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Cla006845 T021992_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla006845 B3 22 129

Links

Other B3 family TFs
Other Citrullus lanatus TFs

267 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 1.000
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.931
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.881
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.881
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.861
30068.m002615 Ricinus communis 30068.m002615 I 0.851
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.851
Pm028725 Prunus mume Pm028725 N 0.851
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.842
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.842
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.842
PK21157.1 Cannabis sativa PK21157.1 I 0.842
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.832
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.832
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.832
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.832
PK11025.1 Cannabis sativa PK11025.1 I 0.832
Pm024248 Prunus mume Pm024248 I 0.832
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.832
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.822
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.822
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.822
TCM_015590 Theobroma cacao TCM_015590 I 0.822
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.822
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.822
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.822
TCM_005014 Theobroma cacao TCM_005014 I 0.822
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.822
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.812
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.812
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.812
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.812
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.812
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.812
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.812
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.812
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.812
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.812
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.812
Bra000434 Brassica rapa Bra000434 N 0.812
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.812
30076.m004471 Ricinus communis 30076.m004471 I 0.812
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.812
Bra003482 Brassica rapa Bra003482 N 0.812
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.812
OS03G0120900 Oryza sativa OS03G0120900 N 0.802
OS10G0537100 Oryza sativa OS10G0537100 N 0.802
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.802
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.802
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.802
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.802
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.802
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.802
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.802
OBART10G17010 Oryza barthii OBART10G17010 N 0.802
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.802
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.802
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.802
Cla005055 Citrullus lanatus Cla005055 N 0.802
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.802
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.802
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.802
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.802
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.802
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.802
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.802
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.802
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.802
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.802
Si036864m.g Setaria italica Si036864m.g N 0.802
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.802
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.802
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.802
OBART03G01650 Oryza barthii OBART03G01650 N 0.802
Ca_01368 Cicer arietinum Ca_01368 I 0.802
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.802
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.802
OB03G11610 Oryza brachyantha OB03G11610 N 0.802
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.802
NGA1 Arabidopsis thaliana AT2G46870 N 0.802
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.802
NGA2 Arabidopsis thaliana AT3G61970 N 0.802
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.802
Bra040478 Brassica rapa Bra040478 I 0.802
Bra004501 Brassica rapa Bra004501 N 0.802
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.802
Bo4g006900 Brassica oleracea Bo4g006900 N 0.802
Bo3g039420 Brassica oleracea Bo3g039420 N 0.802
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.802
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.800
Cla014858 Citrullus lanatus Cla014858 N 0.798
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.798
OB10G24100 Oryza brachyantha OB10G24100 N 0.795
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.792
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.792
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.792
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.792
OS02G0683500 Oryza sativa OS02G0683500 N 0.792
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.792
Bo4g197410 Brassica oleracea Bo4g197410 I 0.792
OBART02G28100 Oryza barthii OBART02G28100 N 0.792
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.792
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.792
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.792
Si020241m.g Setaria italica Si020241m.g N 0.792
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.792
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.792
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.792
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.792
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.792
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.792
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.792
Bra014415 Brassica rapa Bra014415 N 0.792
OB02G35380 Oryza brachyantha OB02G35380 I 0.792
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.792
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.792
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.792
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.792
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.792
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.792
Bo6g079210 Brassica oleracea Bo6g079210 N 0.792
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.790
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.788
Si011823m.g Setaria italica Si011823m.g N 0.782
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.782
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.782
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.782
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.782
OBART04G22880 Oryza barthii OBART04G22880 I 0.782
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.782
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.782
Bo4g099000 Brassica oleracea Bo4g099000 N 0.782
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.782
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.782
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.782
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.782
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.782
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.782
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.782
OS04G0581400 Oryza sativa OS04G0581400 I 0.782
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.782
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.782
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.782
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.782
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.772
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.772
mgf023769m Mimulus guttatus mgf023769m N 0.772
Bra007646 Brassica rapa Bra007646 N 0.772
Bo8g097490 Brassica oleracea Bo8g097490 N 0.772
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.762
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.762
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.762
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.762
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.758
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.758
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.755
Bo5g002790 Brassica oleracea Bo5g002790 N 0.752
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.752
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.752
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.752
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.752
MDP0000138163 Malus domestica MDP0000138163 N 0.752
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.752
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.752
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.752
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.752
MDP0000288808 Malus domestica MDP0000288808 N 0.752
Si039972m.g Setaria italica Si039972m.g N 0.752
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.752
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.752
NGA3 Arabidopsis thaliana AT1G01030 N 0.752
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.752
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.752
Bo3g001110 Brassica oleracea Bo3g001110 N 0.752
Bra030497 Brassica rapa Bra030497 N 0.743
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.743
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.740
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.737
TCM_022729 Theobroma cacao TCM_022729 N 0.737
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.736
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.733
mgf023686m Mimulus guttatus mgf023686m I 0.733
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.733
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.733
MDP0000229742 Malus domestica MDP0000229742 N 0.733
Bra033294 Brassica rapa Bra033294 N 0.733
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.733
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.732
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.727
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.724
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.723
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.723
ARF31 Arabidopsis thaliana AT2G36080 N 0.723
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.723
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.723
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.723
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.723
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.723
F775_20738 Aegilops tauschii F775_20738 I 0.723
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.723
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.717
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.714
Bo01079s020 Brassica oleracea Bo01079s020 N 0.713
Si027632m.g Setaria italica Si027632m.g N 0.713
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.713
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.713
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.713
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.713
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.713
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.713
PK04952.1 Cannabis sativa PK04952.1 I 0.713
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.713
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.713
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.713
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.713
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.713
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.713
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.713
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.713
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.713
mgf019085m Mimulus guttatus mgf019085m N 0.713
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.713
Bra017262 Brassica rapa Bra017262 N 0.713
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.713
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.713
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.713
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.713
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.713
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.713
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.713
ORGLA08G0028800 Oryza glaberrima ORGLA08G0028800 N 0.708
ONIVA08G03420 Oryza nivara ONIVA08G03420 N 0.708
ORUFI08G03850 Oryza rufipogon ORUFI08G03850 N 0.708
OS08G0157700 Oryza sativa OS08G0157700 N 0.708
BGIOSGA028020 Oryza indica BGIOSGA028020 N 0.708
OGLUM08G03520 Oryza glumaepatula OGLUM08G03520 N 0.708
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.703
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.703
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.703
OBART11G03590 Oryza barthii OBART11G03590 N 0.703
Bo9g176470 Brassica oleracea Bo9g176470 N 0.703
OB12G13420 Oryza brachyantha OB12G13420 N 0.703
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.703
OB05G32250 Oryza brachyantha OB05G32250 I 0.703
Bra005301 Brassica rapa Bra005301 N 0.703
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.703
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.703
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.703
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.703
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.703
Ca_25633 Cicer arietinum Ca_25633 I 0.703
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.703
Bo4g035110 Brassica oleracea Bo4g035110 N 0.703
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.703
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.703
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.703
Cla017937 Citrullus lanatus Cla017937 I 0.703
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.703
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.703
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.703
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.703
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.703
30032.m000462 Ricinus communis 30032.m000462 N 0.703
OS11G0156000 Oryza sativa OS11G0156000 N 0.703
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.703