Cla010445 (Citrullus lanatus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Cla010445 T022000_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VRN1
M06704_2.00
Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN

NAMAAAAAAAAAAAAAAAAAAAAAAAWWW
Dap-seq
OMalley et al.(2016)
VRN1_col_a
0.764 0.764
VRN1
M06705_2.00
Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB

VMMAAAAAAAAAAAANVWN
Dap-seq
OMalley et al.(2016)
VRN1_colamp_a
0.764 0.764
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla010445 B3 2 70
Cla010445 B3 243 338

Links

Other B3 family TFs
Other Citrullus lanatus TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.110000 Cucumis sativus Cucsa.110000 N 0.879
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.806
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.794
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.794
MDP0000238744 Malus domestica MDP0000238744 N 0.782
Ca_14825 Cicer arietinum Ca_14825 N 0.782
cassava29880.valid.m1 Manihot esculenta cassava29880.valid.m1 I 0.770
GLYMA20G01130 Glycine max GLYMA20G01130 N 0.764
GLYMA11G13210 Glycine max GLYMA11G13210 N 0.764
MDP0000555456 Malus domestica MDP0000555456 N 0.764
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.758
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.758
Pm021537 Prunus mume Pm021537 N 0.757
Bra022376 Brassica rapa Bra022376 I 0.739
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.720
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.715
TCM_006971 Theobroma cacao TCM_006971 I 0.707