30068.m002615 (Ricinus communis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 30068.m002615 T022194_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30068.m002615 B3 103 208

Links

Other B3 family TFs
Other Ricinus communis TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 1.000
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.960
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.951
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.951
Pm028725 Prunus mume Pm028725 N 0.911
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.901
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.901
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.901
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.901
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.891
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.891
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.891
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.891
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.891
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.891
PK21157.1 Cannabis sativa PK21157.1 I 0.891
TCM_015590 Theobroma cacao TCM_015590 I 0.891
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.881
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.881
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.881
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.881
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.881
30076.m004471 Ricinus communis 30076.m004471 I 0.881
TCM_005014 Theobroma cacao TCM_005014 I 0.881
Pm024248 Prunus mume Pm024248 I 0.881
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.881
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.871
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.871
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.871
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.871
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.871
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.871
Cla005055 Citrullus lanatus Cla005055 N 0.871
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.871
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.861
Bra003482 Brassica rapa Bra003482 N 0.861
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.861
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.861
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.861
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.861
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.861
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.861
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.861
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.861
NGA2 Arabidopsis thaliana AT3G61970 N 0.861
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.851
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.851
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.851
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.851
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.851
PK11025.1 Cannabis sativa PK11025.1 I 0.851
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.851
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.851
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.851
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.851
Cla006845 Citrullus lanatus Cla006845 I 0.851
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.851
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.850
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.843
mgf023769m Mimulus guttatus mgf023769m N 0.842
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.842
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.842
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.842
OB03G11610 Oryza brachyantha OB03G11610 N 0.842
OBART03G01650 Oryza barthii OBART03G01650 N 0.842
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.842
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.842
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.842
Bo8g097490 Brassica oleracea Bo8g097490 N 0.842
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.842
OS03G0120900 Oryza sativa OS03G0120900 N 0.842
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.842
Bra007646 Brassica rapa Bra007646 N 0.842
Si036864m.g Setaria italica Si036864m.g N 0.842
Bra040478 Brassica rapa Bra040478 I 0.842
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.842
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.842
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.842
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.832
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.832
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.832
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.832
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.832
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.832
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.832
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.832
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.832
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.832
Bo6g079210 Brassica oleracea Bo6g079210 N 0.832
NGA1 Arabidopsis thaliana AT2G46870 N 0.832
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.832
Bo3g039420 Brassica oleracea Bo3g039420 N 0.832
Bo4g197410 Brassica oleracea Bo4g197410 I 0.832
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.832
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.832
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.832
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.832
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.832
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.822
Bra000434 Brassica rapa Bra000434 N 0.822
Bra004501 Brassica rapa Bra004501 N 0.822
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.822
Bo4g006900 Brassica oleracea Bo4g006900 N 0.822
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.822
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.822
OBART10G17010 Oryza barthii OBART10G17010 N 0.822
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.822
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.822
Bra014415 Brassica rapa Bra014415 N 0.822
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.822
OS10G0537100 Oryza sativa OS10G0537100 N 0.822
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.822
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.822
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.822
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.822
Bo4g099000 Brassica oleracea Bo4g099000 N 0.812
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.812
Si011823m.g Setaria italica Si011823m.g N 0.812
OBART04G22880 Oryza barthii OBART04G22880 I 0.812
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.812
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.812
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.812
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.812
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.812
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.812
Ca_01368 Cicer arietinum Ca_01368 I 0.812
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.812
OB02G35380 Oryza brachyantha OB02G35380 I 0.812
OS04G0581400 Oryza sativa OS04G0581400 I 0.812
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.812
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.809
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.808
OB10G24100 Oryza brachyantha OB10G24100 N 0.808
Cla014858 Citrullus lanatus Cla014858 N 0.808
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.804
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.802
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.802
Si020241m.g Setaria italica Si020241m.g N 0.802
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.802
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.802
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.802
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.802
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.800
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.792
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.792
MDP0000138163 Malus domestica MDP0000138163 N 0.792
OS02G0683500 Oryza sativa OS02G0683500 N 0.792
OBART02G28100 Oryza barthii OBART02G28100 N 0.792
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.792
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.792
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.792
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.792
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.792
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.792
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.792
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.792
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.792
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.792
Bo3g001110 Brassica oleracea Bo3g001110 N 0.792
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.792
Bo5g002790 Brassica oleracea Bo5g002790 N 0.792
NGA3 Arabidopsis thaliana AT1G01030 N 0.792
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.782
Bra030497 Brassica rapa Bra030497 N 0.782
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.782
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.782
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.772
Bra033294 Brassica rapa Bra033294 N 0.772
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.772
MDP0000288808 Malus domestica MDP0000288808 N 0.772
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.772
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.768
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.762
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.758
SELMODRAFT_59317 Selaginella moellendorffii SELMODRAFT_59317 N 0.753
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.752
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.752
OLONG_022770 Oryza longistaminata OLONG_022770 N 0.750
Traes_2DL_2D1980C7B Triticum aestivum Traes_2DL_2D1980C7B N 0.750
TCM_022729 Theobroma cacao TCM_022729 N 0.747
MDP0000128295 Malus domestica MDP0000128295 N 0.745
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.745
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.743
MDP0000229742 Malus domestica MDP0000229742 N 0.743
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.743
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.743
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.743
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.743
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.741
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.740
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.737
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.737
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.733
mgf023686m Mimulus guttatus mgf023686m I 0.733
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.733
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.733
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.733
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.733
Si039972m.g Setaria italica Si039972m.g N 0.733
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.733
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.727
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.727
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.727
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.727
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.723
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.723
PK04952.1 Cannabis sativa PK04952.1 I 0.723
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.723
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.723
Ca_25633 Cicer arietinum Ca_25633 I 0.723
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.723
30032.m000462 Ricinus communis 30032.m000462 N 0.723
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.723
Bo9g176470 Brassica oleracea Bo9g176470 N 0.723
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.723
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.723
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.723
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.723
mgf019085m Mimulus guttatus mgf019085m N 0.723
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.717
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.714
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.714
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.714
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.713
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.713
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.713
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.713
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.713
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.713
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.713
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.713
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.713
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.713
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.713
Cla017937 Citrullus lanatus Cla017937 I 0.713
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.713
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.713
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.713
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.713
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.711
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.703
Si027632m.g Setaria italica Si027632m.g N 0.703
OB12G13420 Oryza brachyantha OB12G13420 N 0.703
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.703
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.703
Bra001411 Brassica rapa Bra001411 N 0.703
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.703
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.703
Ca_00826 Cicer arietinum Ca_00826 N 0.703
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.703
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.703
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.703
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.703
Bo3g003800 Brassica oleracea Bo3g003800 N 0.703
Bo3g064320 Brassica oleracea Bo3g064320 N 0.703
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.703
Bra005886 Brassica rapa Bra005886 N 0.703
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.703