cassava11456.m1 (Manihot esculenta)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 cassava11456.m1 T022217_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava11456.m1 B3 76 177
cassava11456.m1 B3 422 466

Links

Other B3 family TFs
Other Manihot esculenta TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_027113 Theobroma cacao TCM_027113 I 0.903
LjSGA_022281.1 Lotus japonicus LjSGA_022281.1 I 0.707
MTR_2g005240 Medicago truncatula MTR_2g005240 I 0.707
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.759
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.906
GLYMA16G00220 Glycine max GLYMA16G00220 I 0.707
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.714
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.834
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.866
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.731
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.714
MDP0000929655 Malus domestica MDP0000929655 I 0.714
PK12669.1 Cannabis sativa PK12669.1 I 0.714
29742.m001397 Ricinus communis 29742.m001397 N 0.759
cassava11453.m1 Manihot esculenta cassava11453.m1 N 1.000
cassava11454.m1 Manihot esculenta cassava11454.m1 N 1.000
TRIUR3_33501 Triticum urartu TRIUR3_33501 N 0.757
29609.m000587 Ricinus communis 29609.m000587 N 0.899
Pm003827 Prunus mume Pm003827 N 0.709
Cla001927 Citrullus lanatus Cla001927 N 0.904
VIT_18s0089g00910 Vitis vinifera VIT_18s0089g00910 N 0.757
Traes_2AL_89543BA1A Triticum aestivum Traes_2AL_89543BA1A N 0.757
Traes_2DL_A86E54838 Triticum aestivum Traes_2DL_A86E54838 N 0.768
cassava11455.m1 Manihot esculenta cassava11455.m1 N 1.000
cassava7098.valid.m1 Manihot esculenta cassava7098.valid.m1 N 1.000
Thhalv10023326m.g Eutrema salsugineum Thhalv10023326m.g N 0.819
SapurV1A.0225s0120 Salix purpurea SapurV1A.0225s0120 N 0.851
Lus10024455.g Linum usitatissimum Lus10024455.g N 0.918
Lus10007440.g Linum usitatissimum Lus10007440.g N 0.884
Gorai.011G091100 Gossypium raimondii Gorai.011G091100 N 0.865
gene29255-v1.0-hybrid Fragaria vesca gene29255-v1.0-hybrid N 0.825
Ciclev10000491m.g Citrus clementina Ciclev10000491m.g N 0.891
Carubv10022415m.g Capsella rubella Carubv10022415m.g N 0.833
Cagra.0996s0001 Capsella grandiflora Cagra.0996s0001 N 0.833
Bostr.10040s0256 Boechera stricta Bostr.10040s0256 N 0.808
mgf024961m Mimulus guttatus mgf024961m N 0.706
mgf006427m Mimulus guttatus mgf006427m N 0.859
Cucsa.183410 Cucumis sativus Cucsa.183410 N 0.904
cassava7099.valid.m1 Manihot esculenta cassava7099.valid.m1 N 1.000
Solyc01g103050.2 Solanum lycopersicum Solyc01g103050.2 N 0.836
OGLUM12G13560 Oryza glumaepatula OGLUM12G13560 N 0.702
OGLUM02G20880 Oryza glumaepatula OGLUM02G20880 N 0.815
OBART12G11990 Oryza barthii OBART12G11990 N 0.702
OBART02G20600 Oryza barthii OBART02G20600 N 0.809
GSMUA_Achr6G16450_001 Musa acuminata GSMUA_Achr6G16450_001 N 0.704
GLYMA12G28550 Glycine max GLYMA12G28550 N 0.870
GLYMA07G40270 Glycine max GLYMA07G40270 N 0.925
ARF1 Arabidopsis lyrata fgenesh2_kg.2__468__AT1G59750.1 N 0.805
Bra035427 Brassica rapa Bra035427 N 0.815
Bo4g083590 Brassica oleracea Bo4g083590 N 0.830
Bo1g090350 Brassica oleracea Bo1g090350 N 0.815
BGIOSGA036199 Oryza indica BGIOSGA036199 N 0.702
BGIOSGA008429 Oryza indica BGIOSGA008429 N 0.803
ARF1 Arabidopsis thaliana AT1G59750 N 0.807
OLONG_012362 Oryza longistaminata OLONG_012362 N 0.809
OLONG_019549 Oryza longistaminata OLONG_019549 N 0.702
OMERI02G20310 Oryza meridionalis OMERI02G20310 N 0.809
Sb04g022830 Sorghum bicolor Sb04g022830 N 0.788
PRUPE_ppa002394mg Prunus persica PRUPE_ppa002394mg N 0.856
POPTR_0003s00890 Populus trichocarpa POPTR_0003s00890 N 0.848
ARF24 Oryza sativa OS12G0479400 N 0.702
ARF7 Oryza sativa OS02G0557200 N 0.809
ORUFI12G13110 Oryza rufipogon ORUFI12G13110 N 0.702
ORUFI02G21640 Oryza rufipogon ORUFI02G21640 N 0.809
ORGLA12G0109100 Oryza glaberrima ORGLA12G0109100 N 0.702
ORGLA02G0176700 Oryza glaberrima ORGLA02G0176700 N 0.803
OPUNC12G10620 Oryza punctata OPUNC12G10620 N 0.702
OPUNC02G18520 Oryza punctata OPUNC02G18520 N 0.803
ONIVA12G12070 Oryza nivara ONIVA12G12070 N 0.702
ONIVA02G22590 Oryza nivara ONIVA02G22590 N 0.809
OMERI12G08550 Oryza meridionalis OMERI12G08550 N 0.702
AMTR_s00021p00221770 Amborella trichopoda AMTR_s00021p00221770 N 0.719