cassava29880.valid.m1 (Manihot esculenta)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 cassava29880.valid.m1 T022267_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.709 0.709
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.709 0.709
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava29880.valid.m1 B3 5 98
cassava29880.valid.m1 B3 256 350

Links

Other B3 family TFs
Other Manihot esculenta TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29851.m002498 Ricinus communis 29851.m002498 I 0.942
POPTR_0009s11170 Populus trichocarpa POPTR_0009s11170 I 0.820
SapurV1A.0090s0340 Salix purpurea SapurV1A.0090s0340 I 0.820
TCM_006971 Theobroma cacao TCM_006971 I 0.809
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.804
Pm021537 Prunus mume Pm021537 N 0.803
SapurV1A.2089s0010 Salix purpurea SapurV1A.2089s0010 I 0.799
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.799
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.794
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.788
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.778
MDP0000555456 Malus domestica MDP0000555456 N 0.778
Cla010445 Citrullus lanatus Cla010445 I 0.770
MDP0000238744 Malus domestica MDP0000238744 N 0.767
Lus10012041.g Linum usitatissimum Lus10012041.g N 0.766
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.761
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.757
orange1.1g016655m.g Citrus sinensis orange1.1g016655m.g I 0.753
Ciclev10028642m.g Citrus clementina Ciclev10028642m.g I 0.753
PK10791.1 Cannabis sativa PK10791.1 I 0.735
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.733
Lus10027940.g Linum usitatissimum Lus10027940.g N 0.731
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I 0.730
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I 0.726
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.721
GLYMA20G01130 Glycine max GLYMA20G01130 N 0.716
VRN1 Arabidopsis thaliana AT3G18990 D 0.709
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.709
Ca_14825 Cicer arietinum Ca_14825 N 0.709
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.709
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.709
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.709
Bo1g115980 Brassica oleracea Bo1g115980 I 0.704
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.704