cassava37879.valid.m1 (Manihot esculenta)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 cassava37879.valid.m1 T022279_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.948 0.948
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava37879.valid.m1 B3 122 224

Links

Other B3 family TFs
Other Manihot esculenta TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.979
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.979
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.979
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.979
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.969
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.969
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.969
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.969
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.959
MDP0000221322 Malus domestica MDP0000221322 I 0.959
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.959
Pm030120 Prunus mume Pm030120 I 0.959
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.959
Cla018574 Citrullus lanatus Cla018574 I 0.959
MDP0000131481 Malus domestica MDP0000131481 I 0.959
Pm018533 Prunus mume Pm018533 I 0.959
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.959
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.959
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.959
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.959
TCM_043157 Theobroma cacao TCM_043157 I 0.959
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.959
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.959
Bra011162 Brassica rapa Bra011162 I 0.959
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.959
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.959
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.959
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.959
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.959
Pm031275 Prunus mume Pm031275 I 0.959
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.959
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.959
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.959
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.959
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.948
mgf024607m Mimulus guttatus mgf024607m I 0.948
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.948
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.948
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.948
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.948
30078.m002329 Ricinus communis 30078.m002329 I 0.948
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.948
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.948
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.948
TCM_022163 Theobroma cacao TCM_022163 I 0.948
Bo1g014600 Brassica oleracea Bo1g014600 I 0.948
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.948
PK17007.1 Cannabis sativa PK17007.1 I 0.948
ARF16 Arabidopsis thaliana AT4G30080 D 0.948
TCM_042067 Theobroma cacao TCM_042067 I 0.948
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.948
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.948
Ca_02541 Cicer arietinum Ca_02541 I 0.948
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.948
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.948
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.948
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.948
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.948
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.938
Cla013979 Citrullus lanatus Cla013979 I 0.938
Ca_26121 Cicer arietinum Ca_26121 I 0.938
27538.m000327 Ricinus communis 27538.m000327 I 0.938
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.938
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.938
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.938
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.938
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.938
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.938
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.938
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.938
mgf005300m Mimulus guttatus mgf005300m I 0.938
Bo7g114200 Brassica oleracea Bo7g114200 I 0.938
MDP0000750392 Malus domestica MDP0000750392 I 0.938
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.928
ARF10 Arabidopsis thaliana AT2G28350 I 0.928
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.928
Bra024109 Brassica rapa Bra024109 I 0.928
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.928
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.928
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.928
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.928
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.928
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.928
mgf016139m Mimulus guttatus mgf016139m I 0.927
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.918
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.918
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.918
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.918
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.918
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.918
Ca_17136 Cicer arietinum Ca_17136 I 0.918
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.918
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.918
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.918
27494.m000045 Ricinus communis 27494.m000045 I 0.918
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.918
Si005991m.g Setaria italica Si005991m.g I 0.918
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.918
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.918
ARF18 Oryza sativa OS06G0685700 I 0.918
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.918
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.918
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.918
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.918
Bra011955 Brassica rapa Bra011955 I 0.918
OB06G32920 Oryza brachyantha OB06G32920 I 0.918
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.918
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.918
OBART06G25230 Oryza barthii OBART06G25230 I 0.918
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.918
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.917
Si034525m.g Setaria italica Si034525m.g I 0.907
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.907
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.907
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.907
PK13064.1 Cannabis sativa PK13064.1 I 0.907
Bo4g071620 Brassica oleracea Bo4g071620 I 0.907
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.907
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.907
OB10G20590 Oryza brachyantha OB10G20590 I 0.897
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.897
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.897
F775_32978 Aegilops tauschii F775_32978 I 0.897
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.897
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.897
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.887
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.887
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.887
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.887
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.887
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.887
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.887
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.887
OBART10G13410 Oryza barthii OBART10G13410 I 0.887
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.887
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.887
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.887
ARF22 Oryza sativa OS10G0479900 I 0.887
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.885
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.885
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.885
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.885
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.884
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.876
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.876
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.876
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.876
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.876
Si016509m.g Setaria italica Si016509m.g I 0.876
mgf000336m Mimulus guttatus mgf000336m I 0.876
Cla008883 Citrullus lanatus Cla008883 I 0.876
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.876
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.866
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.866
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.866
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.866
ARF8 Oryza sativa OS02G0628600 I 0.866
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.866
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.866
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.866
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.866
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.866
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.866
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.856
OB02G32150 Oryza brachyantha OB02G32150 I 0.856
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.856
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.856
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.856
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.845
Ca_08488 Cicer arietinum Ca_08488 I 0.845
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.845
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.841
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.835
PK13393.1 Cannabis sativa PK13393.1 I 0.835
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.835
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.835
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.835
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.833
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.833
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.833
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.825
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.804
OBART04G18910 Oryza barthii OBART04G18910 I 0.804
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.804
OS04G0519700 Oryza sativa OS04G0519700 I 0.804
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.804
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.804
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.804
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.804
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.804
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.804
ARF10 Oryza indica BGIOSGA016767 I 0.804
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.786
Si009541m.g Setaria italica Si009541m.g I 0.784
OB04G25990 Oryza brachyantha OB04G25990 I 0.784
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.773
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.772
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.763
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.763
Ca_17624 Cicer arietinum Ca_17624 I 0.753
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.753
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.740
OBART02G24860 Oryza barthii OBART02G24860 I 0.733
TCM_035002 Theobroma cacao TCM_035002 I 0.732
Cla022413 Citrullus lanatus Cla022413 I 0.732
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.722
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.722
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.722
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.722
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.722
29908.m005953 Ricinus communis 29908.m005953 I 0.722
TCM_029792 Theobroma cacao TCM_029792 I 0.717
PK10136.1 Cannabis sativa PK10136.1 I 0.711
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.711
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.711
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.711
Pm019126 Prunus mume Pm019126 I 0.711
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.711
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.704
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.701
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.701
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.701
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.701
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.701
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.701
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.701