Cagra.1841s0002 (Capsella grandiflora)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Cagra.1841s0002 T022770_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FUS3
M06706_2.00
Arabidopsis thaliana
WNHWTGCATGYDHDW

WHDHRCATGCAWDNW
Dap-seq
OMalley et al.(2016)
FUS3_col_a
0.960 0.960
FUS3
M09773_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FUS3_Q2
0.960 0.960
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1841s0002.1.p B3 94 196

Links

Other B3 family TFs
Other Capsella grandiflora TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30131.m006860 Ricinus communis 30131.m006860 I 0.838
Bo00285s530 Brassica oleracea Bo00285s530 I 0.919
Bo7g083910 Brassica oleracea Bo7g083910 I 0.779
Bostr.0556s0351 Boechera stricta Bostr.0556s0351 I 0.959
Bra032953 Brassica rapa Bra032953 I 0.919
Carubv10019353m.g Capsella rubella Carubv10019353m.g I 1.000
cassava11393.m1 Manihot esculenta cassava11393.m1 I 0.808
cassava14836.m1 Manihot esculenta cassava14836.m1 I 0.737
Ca_05976 Cicer arietinum Ca_05976 I 0.788
Ciclev10016085m.g Citrus clementina Ciclev10016085m.g I 0.869
Cla009252 Citrullus lanatus Cla009252 I 0.838
FUS3 Arabidopsis thaliana AT3G26790 D 0.960
FUS3 Vitis vinifera VIT_14s0068g01290 I 0.758
FUS3 Arabidopsis lyrata fgenesh2_kg.5__447__AT3G26790.1 I 0.949
GLYMA16G05480 Glycine max GLYMA16G05480 I 0.808
GLYMA19G27336 Glycine max GLYMA19G27336 I 0.818
Gorai.001G273500 Gossypium raimondii Gorai.001G273500 I 0.827
Lus10012572.g Linum usitatissimum Lus10012572.g I 0.808
Lus10041521.g Linum usitatissimum Lus10041521.g I 0.827
MTR_7g083700 Medicago truncatula MTR_7g083700 I 0.784
orange1.1g041864m.g Citrus sinensis orange1.1g041864m.g I 0.869
Pm016099 Prunus mume Pm016099 I 0.859
POPTR_0001s32990 Populus trichocarpa POPTR_0001s32990 I 0.818
POPTR_0017s08820 Populus trichocarpa POPTR_0017s08820 I 0.859
PRUPE_ppa021307mg Prunus persica PRUPE_ppa021307mg I 0.857
TCM_017321 Theobroma cacao TCM_017321 I 0.828
Thhalv10005481m.g Eutrema salsugineum Thhalv10005481m.g I 0.939