Carubv10010224m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10010224m.g T022851_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
REM19
M06702_2.00
Arabidopsis thaliana
TKWTTTTTTTTTKKY

RMMAAAAAAAAAWMA
Dap-seq
OMalley et al.(2016)
REM19_col_a
0.979 0.979
REM19
M06703_2.00
Arabidopsis thaliana
NWBTTTTTTTTTTTTKKHHWH

DWDDMMAAAAAAAAAAAAVWN
Dap-seq
OMalley et al.(2016)
REM19_colamp_a
0.979 0.979
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010224m B3 130 224

Links

Other B3 family TFs
Other Capsella rubella TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.4084s0003 Capsella grandiflora Cagra.4084s0003 I 1.000
Bostr.26675s0223 Boechera stricta Bostr.26675s0223 I 1.000
RTV1 Arabidopsis lyrata scaffold_104641.1 I 1.000
Thhalv10012062m.g Eutrema salsugineum Thhalv10012062m.g I 0.979
REM19 Arabidopsis thaliana AT1G49480 D 0.979
Bo5g076230 Brassica oleracea Bo5g076230 I 0.968
Bra032286 Brassica rapa Bra032286 I 0.968
Bra014192 Brassica rapa Bra014192 I 0.894
Bo8g011550 Brassica oleracea Bo8g011550 I 0.874
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.779
TCM_037983 Theobroma cacao TCM_037983 I 0.775
Gorai.013G039800 Gossypium raimondii Gorai.013G039800 I 0.737
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.719