Carubv10014376m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10014376m.g T022866_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014376m B3 36 152

Links

Other B3 family TFs
Other Capsella rubella TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 1.000
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.990
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.990
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.990
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.960
Bra001411 Brassica rapa Bra001411 N 0.941
Bo3g064320 Brassica oleracea Bo3g064320 N 0.931
Bra041023 Brassica rapa Bra041023 N 0.911
Bra034828 Brassica rapa Bra034828 N 0.891
Bo5g136360 Brassica oleracea Bo5g136360 N 0.891
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.881
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.881
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.881
Bo9g176470 Brassica oleracea Bo9g176470 N 0.871
Bra005886 Brassica rapa Bra005886 N 0.871
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.871
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.871
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.871
Bo3g003800 Brassica oleracea Bo3g003800 N 0.861
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.861
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.851
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.848
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.848
TCM_022729 Theobroma cacao TCM_022729 N 0.848
Ca_25633 Cicer arietinum Ca_25633 I 0.842
30032.m000462 Ricinus communis 30032.m000462 N 0.832
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.832
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.832
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.832
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.832
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.832
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.832
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.832
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.832
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.822
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.822
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.822
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.822
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.822
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.821
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.812
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.812
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.812
Ca_00826 Cicer arietinum Ca_00826 N 0.812
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.812
ARF31 Arabidopsis thaliana AT2G36080 N 0.812
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.812
Bo01079s020 Brassica oleracea Bo01079s020 N 0.812
PK04952.1 Cannabis sativa PK04952.1 I 0.812
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.812
Bra017262 Brassica rapa Bra017262 N 0.812
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.808
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.802
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.802
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.792
Bo4g035110 Brassica oleracea Bo4g035110 N 0.792
Cla017937 Citrullus lanatus Cla017937 I 0.792
Bra005301 Brassica rapa Bra005301 N 0.792
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.792
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.792
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.782
OB12G13420 Oryza brachyantha OB12G13420 N 0.782
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.782
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.782
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.782
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.782
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.782
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.782
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.782
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.778
mgf019085m Mimulus guttatus mgf019085m N 0.772
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.772
MDP0000229742 Malus domestica MDP0000229742 N 0.772
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.771
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.771
mgf018965m Mimulus guttatus mgf018965m N 0.768
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.768
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.764
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.762
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.762
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.762
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.762
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.762
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.758
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.752
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.752
TCM_015590 Theobroma cacao TCM_015590 I 0.752
PK11025.1 Cannabis sativa PK11025.1 I 0.752
F775_02500 Aegilops tauschii F775_02500 N 0.752
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.752
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.752
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.752
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.752
Si027632m.g Setaria italica Si027632m.g N 0.752
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.747
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.743
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.743
OB03G11610 Oryza brachyantha OB03G11610 N 0.743
OBART03G01650 Oryza barthii OBART03G01650 N 0.743
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.743
OBART11G03590 Oryza barthii OBART11G03590 N 0.743
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.743
Si036864m.g Setaria italica Si036864m.g N 0.743
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.743
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.743
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.743
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.743
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.743
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.743
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.743
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.743
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.743
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.743
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.743
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.743
Pm024248 Prunus mume Pm024248 I 0.743
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.743
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.743
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.743
OS11G0156000 Oryza sativa OS11G0156000 N 0.743
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.743
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.743
OS03G0120900 Oryza sativa OS03G0120900 N 0.743
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.743
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.743
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.741
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.737
Cla014858 Citrullus lanatus Cla014858 N 0.737
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.733
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.733
mgf023769m Mimulus guttatus mgf023769m N 0.733
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.733
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.733
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.733
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.733
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.733
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.733
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.733
OBART04G22880 Oryza barthii OBART04G22880 I 0.733
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.733
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.733
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.733
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.733
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.733
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.733
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.733
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.733
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.733
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.733
OB11G12920 Oryza brachyantha OB11G12920 N 0.733
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.733
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.733
TCM_005014 Theobroma cacao TCM_005014 I 0.733
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.733
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.733
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.733
Bra040478 Brassica rapa Bra040478 I 0.733
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.733
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.733
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.733
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.733
Si011823m.g Setaria italica Si011823m.g N 0.733
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.733
OS04G0581400 Oryza sativa OS04G0581400 I 0.733
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.723
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.723
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.723
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.723
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.723
Bo4g006900 Brassica oleracea Bo4g006900 N 0.723
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.723
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.723
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.723
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.723
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.723
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.723
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.723
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.723
OBART12G03490 Oryza barthii OBART12G03490 N 0.723
30076.m004471 Ricinus communis 30076.m004471 I 0.723
Bra004501 Brassica rapa Bra004501 N 0.723
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.723
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.723
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.723
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.723
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.723
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.720
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.720
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.716
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.714
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.713
NGA1 Arabidopsis thaliana AT2G46870 N 0.713
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.713
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.713
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.713
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.713
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.713
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.713
Bo4g197410 Brassica oleracea Bo4g197410 I 0.713
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.713
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.713
30068.m002615 Ricinus communis 30068.m002615 I 0.713
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.713
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.713
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.713
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.713
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.713
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.713
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.713
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.713
Bra000434 Brassica rapa Bra000434 N 0.713
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.713
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.713
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.713
Bo6g079210 Brassica oleracea Bo6g079210 N 0.713
OB02G35380 Oryza brachyantha OB02G35380 I 0.713
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.713
Bo3g039420 Brassica oleracea Bo3g039420 N 0.713
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.713
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.713
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.703
OS02G0683500 Oryza sativa OS02G0683500 N 0.703
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.703
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.703
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.703
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.703
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.703
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.703
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.703
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.703
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.703
Bra003482 Brassica rapa Bra003482 N 0.703
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.703
OBART02G28100 Oryza barthii OBART02G28100 N 0.703
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.703
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.703
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.703
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.703