Carubv10017696m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10017696m.g T022880_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017696m B3 25 131

Links

Other B3 family TFs
Other Capsella rubella TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.990
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.970
NGA2 Arabidopsis thaliana AT3G61970 N 0.970
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.970
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.941
Bra003482 Brassica rapa Bra003482 N 0.911
Bra007646 Brassica rapa Bra007646 N 0.901
Bo8g097490 Brassica oleracea Bo8g097490 N 0.901
Bo6g079210 Brassica oleracea Bo6g079210 N 0.901
Bra014415 Brassica rapa Bra014415 N 0.871
Bo4g099000 Brassica oleracea Bo4g099000 N 0.861
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.857
30068.m002615 Ricinus communis 30068.m002615 I 0.851
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.851
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.851
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.851
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.851
TCM_015590 Theobroma cacao TCM_015590 I 0.842
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.842
Pm028725 Prunus mume Pm028725 N 0.842
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.842
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.842
TCM_005014 Theobroma cacao TCM_005014 I 0.842
PK21157.1 Cannabis sativa PK21157.1 I 0.842
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.842
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.842
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.842
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.842
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.842
Pm024248 Prunus mume Pm024248 I 0.832
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.832
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.832
Bra040478 Brassica rapa Bra040478 I 0.832
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.832
30076.m004471 Ricinus communis 30076.m004471 I 0.832
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.832
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.832
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.832
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.832
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.822
PK11025.1 Cannabis sativa PK11025.1 I 0.822
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.822
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.822
NGA1 Arabidopsis thaliana AT2G46870 N 0.822
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.822
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.822
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.822
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.822
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.822
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.822
Bo4g197410 Brassica oleracea Bo4g197410 I 0.822
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.822
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.822
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.822
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.814
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.812
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.812
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.812
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.812
Bra004501 Brassica rapa Bra004501 N 0.812
Cla005055 Citrullus lanatus Cla005055 N 0.812
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.812
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.812
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.812
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.811
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.802
mgf023769m Mimulus guttatus mgf023769m N 0.802
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.802
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.802
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.802
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.802
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.802
Bo4g006900 Brassica oleracea Bo4g006900 N 0.802
Bra000434 Brassica rapa Bra000434 N 0.802
Bo3g039420 Brassica oleracea Bo3g039420 N 0.802
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.802
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.800
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.798
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.792
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.792
Cla006845 Citrullus lanatus Cla006845 I 0.792
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.792
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.792
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.792
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.792
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.792
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.792
Bo3g001110 Brassica oleracea Bo3g001110 N 0.792
NGA3 Arabidopsis thaliana AT1G01030 N 0.792
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.792
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.792
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.792
Bo5g002790 Brassica oleracea Bo5g002790 N 0.792
Cla014858 Citrullus lanatus Cla014858 N 0.788
Bra030497 Brassica rapa Bra030497 N 0.782
Ca_01368 Cicer arietinum Ca_01368 I 0.782
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.782
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.782
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.782
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.782
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.775
OB03G11610 Oryza brachyantha OB03G11610 N 0.772
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.772
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.772
Bra033294 Brassica rapa Bra033294 N 0.772
MDP0000128295 Malus domestica MDP0000128295 N 0.766
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.762
Si036864m.g Setaria italica Si036864m.g N 0.762
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.762
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.762
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.762
MDP0000138163 Malus domestica MDP0000138163 N 0.762
OBART03G01650 Oryza barthii OBART03G01650 N 0.762
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.762
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.762
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.762
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.762
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.762
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.762
OBART04G22880 Oryza barthii OBART04G22880 I 0.762
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.762
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.762
OS03G0120900 Oryza sativa OS03G0120900 N 0.762
OS04G0581400 Oryza sativa OS04G0581400 I 0.762
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.762
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.762
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.762
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.762
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.762
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.752
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.752
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.752
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.752
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.752
Si011823m.g Setaria italica Si011823m.g N 0.752
OB02G35380 Oryza brachyantha OB02G35380 I 0.752
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.752
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.752
OB10G24100 Oryza brachyantha OB10G24100 N 0.744
MDP0000288808 Malus domestica MDP0000288808 N 0.743
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.743
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.743
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.743
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.743
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.743
mgf023686m Mimulus guttatus mgf023686m I 0.743
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.743
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.743
SELMODRAFT_59317 Selaginella moellendorffii SELMODRAFT_59317 N 0.741
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.737
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.733
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.733
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.733
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.733
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.733
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.733
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.733
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.733
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.733
OBART02G28100 Oryza barthii OBART02G28100 N 0.733
OBART10G17010 Oryza barthii OBART10G17010 N 0.733
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.733
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.733
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.733
OS02G0683500 Oryza sativa OS02G0683500 N 0.733
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.733
OS10G0537100 Oryza sativa OS10G0537100 N 0.733
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.733
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.732
TCM_022729 Theobroma cacao TCM_022729 N 0.727
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.727
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.724
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.723
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.723
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.723
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.723
Si020241m.g Setaria italica Si020241m.g N 0.723
Si039972m.g Setaria italica Si039972m.g N 0.723
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.717
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.714
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.714
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.713
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.713
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.713
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.713
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.713
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.713
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.713
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.713
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.713
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.713
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.713
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.713
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.713
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.711
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.710
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.707
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.707
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.704
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.703
Bra034828 Brassica rapa Bra034828 N 0.703
Bo3g064320 Brassica oleracea Bo3g064320 N 0.703
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.703
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.703
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.703
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.703
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.703
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.703
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.703
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.703
MDP0000229742 Malus domestica MDP0000229742 N 0.703
OLONG_010584 Oryza longistaminata OLONG_010584 I 0.702