Carubv10022654m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10022654m.g T022888_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022654m B3 306 406

Links

Other B3 family TFs
Other Capsella rubella TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.24513s0191 Boechera stricta Bostr.24513s0191 N 1.000
Cagra.0567s0011 Capsella grandiflora Cagra.0567s0011 N 0.990
VAL1 Arabidopsis thaliana AT2G30470 N 0.980
HSI2 Arabidopsis lyrata scaffold_401535.1 N 0.980
Bra021635 Brassica rapa Bra021635 N 0.969
Bo3g024640 Brassica oleracea Bo3g024640 N 0.969
Bra022801 Brassica rapa Bra022801 N 0.969
Thhalv10016263m.g Eutrema salsugineum Thhalv10016263m.g N 0.960
Bo4g173060 Brassica oleracea Bo4g173060 N 0.959
Bo4g058460 Brassica oleracea Bo4g058460 N 0.939
Bra018313 Brassica rapa Bra018313 N 0.939
PK13763.1 Cannabis sativa PK13763.1 N 0.908
TCM_042290 Theobroma cacao TCM_042290 N 0.908
PK09020.1 Cannabis sativa PK09020.1 N 0.908
GLYMA01G32810 Glycine max GLYMA01G32810 N 0.898
gene13877-v1.0-hybrid Fragaria vesca gene13877-v1.0-hybrid N 0.898
Gorai.003G152700 Gossypium raimondii Gorai.003G152700 N 0.898
Pm003031 Prunus mume Pm003031 N 0.898
Ca_23185 Cicer arietinum Ca_23185 N 0.898
GLYMA03G04330 Glycine max GLYMA03G04330 N 0.898
PRUPE_ppa001234mg Prunus persica PRUPE_ppa001234mg N 0.898
MTR_4g028130 Medicago truncatula MTR_4g028130 N 0.898
TCM_019701 Theobroma cacao TCM_019701 N 0.889
Lus10025226.g Linum usitatissimum Lus10025226.g N 0.889
orange1.1g002708m.g Citrus sinensis orange1.1g002708m.g N 0.888
cassava13133.valid.m1 Manihot esculenta cassava13133.valid.m1 N 0.888
29915.m000469 Ricinus communis 29915.m000469 N 0.888
PRUPE_ppa001229mg Prunus persica PRUPE_ppa001229mg N 0.888
Ciclev10011039m.g Citrus clementina Ciclev10011039m.g N 0.888
Solyc10g075030.1 Solanum lycopersicum Solyc10g075030.1 N 0.879
Eucgr.F02704 Eucalyptus grandis Eucgr.F02704 N 0.879
SapurV1A.0065s0470 Salix purpurea SapurV1A.0065s0470 N 0.879
HSL1 Vitis vinifera VIT_08s0058g01300 N 0.879
SapurV1A.0914s0080 Salix purpurea SapurV1A.0914s0080 N 0.879
POPTR_0006s10880 Populus trichocarpa POPTR_0006s10880 N 0.879
POPTR_0016s14350 Populus trichocarpa POPTR_0016s14350 N 0.879
POPTR_0019s15070 Populus trichocarpa POPTR_0019s15070 N 0.879
Pm000247 Prunus mume Pm000247 N 0.879
cassava25238.valid.m1 Manihot esculenta cassava25238.valid.m1 N 0.878
Thhalv10024481m.g Eutrema salsugineum Thhalv10024481m.g N 0.878
Bo7g115560 Brassica oleracea Bo7g115560 N 0.878
Cla018330 Citrullus lanatus Cla018330 N 0.878
Bo7g115570 Brassica oleracea Bo7g115570 N 0.878
Cucsa.177010 Cucumis sativus Cucsa.177010 N 0.878
GLYMA11G31234 Glycine max GLYMA11G31234 N 0.878
Bostr.7867s1055 Boechera stricta Bostr.7867s1055 N 0.878
Lus10025142.g Linum usitatissimum Lus10025142.g N 0.878
Gorai.005G004300 Gossypium raimondii Gorai.005G004300 N 0.878
Gorai.011G127500 Gossypium raimondii Gorai.011G127500 N 0.878
GLYMA18G05840 Glycine max GLYMA18G05840 N 0.878
MDP0000229344 Malus domestica MDP0000229344 N 0.878
SapurV1A.0215s0260 Salix purpurea SapurV1A.0215s0260 N 0.878
Lus10022741.g Linum usitatissimum Lus10022741.g N 0.878
Bra023968 Brassica rapa Bra023968 N 0.878
gene28098-v1.0-hybrid Fragaria vesca gene28098-v1.0-hybrid N 0.869
MDP0000127640 Malus domestica MDP0000127640 N 0.869
MDP0000267885 Malus domestica MDP0000267885 N 0.869
Pavir.Bb03074 Panicum virgatum Pavir.Bb03074 N 0.869
evm.TU.supercontig_0.91 Carica papaya evm.TU.supercontig_0.91 N 0.869
Ciclev10000225m.g Citrus clementina Ciclev10000225m.g N 0.869
Cla008225 Citrullus lanatus Cla008225 N 0.869
Traes_2DS_B1C947D2B Triticum aestivum Traes_2DS_B1C947D2B N 0.867
TRIUR3_04238 Triticum urartu TRIUR3_04238 N 0.867
Traes_2BS_5B00A8C50 Triticum aestivum Traes_2BS_5B00A8C50 N 0.867
evm.TU.supercontig_2.296 Carica papaya evm.TU.supercontig_2.296 N 0.867
Si028829m.g Setaria italica Si028829m.g N 0.867
mgf007363m Mimulus guttatus mgf007363m N 0.867
Ca_08924 Cicer arietinum Ca_08924 N 0.867
Traes_2AS_F4CEC9849 Triticum aestivum Traes_2AS_F4CEC9849 N 0.867
ORGLA07G0207500 Oryza glaberrima ORGLA07G0207500 N 0.867
BRADI1G17680 Brachypodium distachyon BRADI1G17680 N 0.867
LPERR07G23240 Leersia perrieri LPERR07G23240 N 0.867
OMERI07G23020 Oryza meridionalis OMERI07G23020 N 0.867
OB07G31850 Oryza brachyantha OB07G31850 N 0.867
OBART07G26400 Oryza barthii OBART07G26400 N 0.867
OLONG_008212 Oryza longistaminata OLONG_008212 N 0.867
BGIOSGA023709 Oryza indica BGIOSGA023709 N 0.867
ONIVA07G26110 Oryza nivara ONIVA07G26110 N 0.867
OGLUM07G26430 Oryza glumaepatula OGLUM07G26430 N 0.867
OS07G0679700 Oryza sativa OS07G0679700 N 0.867
ORUFI07G27410 Oryza rufipogon ORUFI07G27410 N 0.867
F775_32613 Aegilops tauschii F775_32613 N 0.867
GRMZM2G172621 Zea mays GRMZM2G172621 N 0.859
GRMZM2G158162 Zea mays GRMZM2G158162 N 0.859
Sb02g043000 Sorghum bicolor Sb02g043000 N 0.859
29976.m000497 Ricinus communis 29976.m000497 N 0.859
Solyc06g082520.2 Solanum lycopersicum Solyc06g082520.2 N 0.859
Sb02g036430 Sorghum bicolor Sb02g036430 N 0.857
GRMZM2G008356 Zea mays GRMZM2G008356 N 0.857
Eucgr.B04027 Eucalyptus grandis Eucgr.B04027 N 0.857
PDK_20s13009463g004 Phoenix dactylifera PDK_20s13009463g004 N 0.857
Pavir.Ba00654 Panicum virgatum Pavir.Ba00654 N 0.857
POPTR_0013s15330 Populus trichocarpa POPTR_0013s15330 N 0.857
Pavir.Bb03754 Panicum virgatum Pavir.Bb03754 N 0.848
Pavir.Ba00225 Panicum virgatum Pavir.Ba00225 N 0.848
Si028834m.g Setaria italica Si028834m.g N 0.848
GSMUA_Achr5G27930_001 Musa acuminata GSMUA_Achr5G27930_001 N 0.848
Pm009906 Prunus mume Pm009906 N 0.847
Aquca_008_00005 Aquilegia coerulea Aquca_008_00005 N 0.847
GSMUA_Achr4G23790_001 Musa acuminata GSMUA_Achr4G23790_001 N 0.847
PRUPE_ppa001220mg Prunus persica PRUPE_ppa001220mg N 0.847
PK04158.1 Cannabis sativa PK04158.1 N 0.847
Cucsa.045980 Cucumis sativus Cucsa.045980 N 0.847
TCM_029976 Theobroma cacao TCM_029976 N 0.847
PDK_20s13009466g004 Phoenix dactylifera PDK_20s13009466g004 N 0.847
AMTR_s00003p00266720 Amborella trichopoda AMTR_s00003p00266720 N 0.847
OMERI07G15550 Oryza meridionalis OMERI07G15550 N 0.838
SapurV1A.1353s0040 Salix purpurea SapurV1A.1353s0040 N 0.838
BGIOSGA025947 Oryza indica BGIOSGA025947 N 0.838
ORUFI07G19520 Oryza rufipogon ORUFI07G19520 N 0.838
LPERR07G16110 Leersia perrieri LPERR07G16110 N 0.838
Gorai.011G022400 Gossypium raimondii Gorai.011G022400 N 0.838
Solyc02g079020.2 Solanum lycopersicum Solyc02g079020.2 N 0.838
GSMUA_Achr8G01750_001 Musa acuminata GSMUA_Achr8G01750_001 N 0.838
OBART07G18780 Oryza barthii OBART07G18780 N 0.838
BRADI1G24720 Brachypodium distachyon BRADI1G24720 N 0.838
OLONG_013183 Oryza longistaminata OLONG_013183 N 0.838
ORGLA07G0151800 Oryza glaberrima ORGLA07G0151800 N 0.838
OGLUM07G18530 Oryza glumaepatula OGLUM07G18530 N 0.838
ONIVA07G17160 Oryza nivara ONIVA07G17160 N 0.838
VIT_06s0004g08100 Vitis vinifera VIT_06s0004g08100 N 0.838
OPUNC07G17640 Oryza punctata OPUNC07G17640 N 0.838
MTR_3g467380 Medicago truncatula MTR_3g467380 N 0.837
mgf007846m Mimulus guttatus mgf007846m N 0.837
mgf013365m Mimulus guttatus mgf013365m N 0.837
Aquca_063_00016 Aquilegia coerulea Aquca_063_00016 N 0.837
VAL3 Vitis vinifera VIT_00s0181g00260 N 0.828
MLOC_4657 Hordeum vulgare MLOC_4657 N 0.828
Ciclev10014219m.g Citrus clementina Ciclev10014219m.g N 0.828
SapurV1A.0044s0150 Salix purpurea SapurV1A.0044s0150 N 0.828
GLYMA15G07350 Glycine max GLYMA15G07350 N 0.828
Traes_2BS_A61094919 Triticum aestivum Traes_2BS_A61094919 N 0.828
LjSGA_009543.1 Lotus japonicus LjSGA_009543.1 N 0.828
Traes_2DS_3E4E3BEFC Triticum aestivum Traes_2DS_3E4E3BEFC N 0.828
orange1.1g002489m.g Citrus sinensis orange1.1g002489m.g N 0.828
GLYMA13G31970 Glycine max GLYMA13G31970 N 0.828
GSMUA_Achr7G00120_001 Musa acuminata GSMUA_Achr7G00120_001 N 0.828
MTR_2g011940 Medicago truncatula MTR_2g011940 N 0.828
Traes_2AS_C4FD8E351 Triticum aestivum Traes_2AS_C4FD8E351 N 0.828
Gorai.009G173100 Gossypium raimondii Gorai.009G173100 N 0.827
Lus10018440.g Linum usitatissimum Lus10018440.g N 0.827
SELMODRAFT_451631 Selaginella moellendorffii SELMODRAFT_451631 N 0.827
SapurV1A.0028s0060 Salix purpurea SapurV1A.0028s0060 N 0.827
cassava41301.m1 Manihot esculenta cassava41301.m1 N 0.827
cassava39646.m1 Manihot esculenta cassava39646.m1 N 0.827
MLOC_36861 Hordeum vulgare MLOC_36861 N 0.826
POPTR_0004s03530 Populus trichocarpa POPTR_0004s03530 N 0.818
POPTR_0011s04340 Populus trichocarpa POPTR_0011s04340 N 0.818
GSMUA_Achr8G03800_001 Musa acuminata GSMUA_Achr8G03800_001 N 0.818
SELMODRAFT_451626 Selaginella moellendorffii SELMODRAFT_451626 N 0.818
GLYMA02G40280 Glycine max GLYMA02G40280 N 0.816
Eucgr.L01473 Eucalyptus grandis Eucgr.L01473 N 0.816
GLYMA14G38492 Glycine max GLYMA14G38492 N 0.816
OS07G0563350 Oryza sativa OS07G0563350 N 0.808
gene30690-v1.0-hybrid Fragaria vesca gene30690-v1.0-hybrid N 0.806
29917.m001969 Ricinus communis 29917.m001969 N 0.806
HSL1 Arabidopsis lyrata scaffold_700997.1 N 0.804
Carubv10004194m.g Capsella rubella Carubv10004194m.g N 0.804
VAL2 Arabidopsis thaliana AT4G32010 N 0.804
Cagra.12385s0007 Capsella grandiflora Cagra.12385s0007 N 0.804
Bostr.10689s0100 Boechera stricta Bostr.10689s0100 N 0.798
Aquca_045_00208 Aquilegia coerulea Aquca_045_00208 N 0.786
Eucgr.E03465 Eucalyptus grandis Eucgr.E03465 N 0.786
mgf024907m Mimulus guttatus mgf024907m N 0.786
OPUNC07G24850 Oryza punctata OPUNC07G24850 N 0.765
Thhalv10024526m.g Eutrema salsugineum Thhalv10024526m.g N 0.765
PDK_20s1314471g001 Phoenix dactylifera PDK_20s1314471g001 N 0.761
Ca_00244 Cicer arietinum Ca_00244 N 0.760
Bra013535 Brassica rapa Bra013535 N 0.758
Ca_15659 Cicer arietinum Ca_15659 N 0.755
Bo1g024250 Brassica oleracea Bo1g024250 N 0.755
LjSGA_029833.1 Lotus japonicus LjSGA_029833.1 N 0.755
Carubv10004192m.g Capsella rubella Carubv10004192m.g N 0.747
Cagra.3519s0007 Capsella grandiflora Cagra.3519s0007 N 0.745
Cucsa.111990 Cucumis sativus Cucsa.111990 N 0.745
MTR_5g075410 Medicago truncatula MTR_5g075410 N 0.742
SELMODRAFT_451634 Selaginella moellendorffii SELMODRAFT_451634 N 0.737
SELMODRAFT_451635 Selaginella moellendorffii SELMODRAFT_451635 N 0.737
F775_30051 Aegilops tauschii F775_30051 N 0.719
orange1.1g039386m.g Citrus sinensis orange1.1g039386m.g N 0.710