Carubv10023656m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10023656m.g T022895_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023656m B3 43 149

Links

Other B3 family TFs
Other Capsella rubella TFs

261 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 1.000
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 1.000
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 1.000
NGA1 Arabidopsis thaliana AT2G46870 N 1.000
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.980
Bo3g039420 Brassica oleracea Bo3g039420 N 0.960
Bra004501 Brassica rapa Bra004501 N 0.960
Bo4g006900 Brassica oleracea Bo4g006900 N 0.960
Bra000434 Brassica rapa Bra000434 N 0.951
Bra040478 Brassica rapa Bra040478 I 0.950
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.941
Bo4g197410 Brassica oleracea Bo4g197410 I 0.930
TCM_005014 Theobroma cacao TCM_005014 I 0.891
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.886
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.881
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.881
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.881
TCM_015590 Theobroma cacao TCM_015590 I 0.881
OB04G29740 Oryza brachyantha OB04G29740 I 0.875
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.871
30076.m004471 Ricinus communis 30076.m004471 I 0.871
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.871
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.871
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.871
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.871
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.871
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.871
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.871
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.871
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.871
Pm024248 Prunus mume Pm024248 I 0.871
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.871
PK11025.1 Cannabis sativa PK11025.1 I 0.871
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.865
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.861
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.861
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.861
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.861
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.861
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.861
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.861
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.859
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.857
Bo6g079210 Brassica oleracea Bo6g079210 N 0.851
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.851
MDP0000128295 Malus domestica MDP0000128295 N 0.851
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.851
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.851
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.851
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.851
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.851
Cla014858 Citrullus lanatus Cla014858 N 0.848
Bo8g097490 Brassica oleracea Bo8g097490 N 0.842
mgf023769m Mimulus guttatus mgf023769m N 0.842
Bra007646 Brassica rapa Bra007646 N 0.842
OB03G11610 Oryza brachyantha OB03G11610 N 0.842
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.842
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.842
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.842
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.842
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.840
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.832
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.832
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.832
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.832
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.832
30068.m002615 Ricinus communis 30068.m002615 I 0.832
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.832
NGA3 Arabidopsis thaliana AT1G01030 N 0.832
OBART03G01650 Oryza barthii OBART03G01650 N 0.832
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.832
Bra003482 Brassica rapa Bra003482 N 0.832
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.832
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.832
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.832
PK21157.1 Cannabis sativa PK21157.1 I 0.832
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.832
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.832
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.832
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.832
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.832
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.832
Ca_01368 Cicer arietinum Ca_01368 I 0.832
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.832
OS03G0120900 Oryza sativa OS03G0120900 N 0.832
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.832
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.832
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.832
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.832
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.828
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.822
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.822
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.822
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.822
Bo5g002790 Brassica oleracea Bo5g002790 N 0.822
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.822
Bra014415 Brassica rapa Bra014415 N 0.822
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.822
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.822
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.822
MDP0000138163 Malus domestica MDP0000138163 N 0.822
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.822
Si036864m.g Setaria italica Si036864m.g N 0.822
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.820
MLOC_48938 Hordeum vulgare MLOC_48938 N 0.818
Cla005055 Citrullus lanatus Cla005055 N 0.816
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.813
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.812
OS04G0581400 Oryza sativa OS04G0581400 I 0.812
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.812
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.812
Pm028725 Prunus mume Pm028725 N 0.812
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.812
Bo4g099000 Brassica oleracea Bo4g099000 N 0.812
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.812
Bra030497 Brassica rapa Bra030497 N 0.812
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.812
OBART04G22880 Oryza barthii OBART04G22880 I 0.812
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.812
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.812
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.812
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.812
NGA2 Arabidopsis thaliana AT3G61970 N 0.812
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.809
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.802
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.802
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.802
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.802
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.802
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.802
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.802
Cla006845 Citrullus lanatus Cla006845 I 0.802
OB02G35380 Oryza brachyantha OB02G35380 I 0.802
OBART02G28100 Oryza barthii OBART02G28100 N 0.802
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.802
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.802
Bo3g001110 Brassica oleracea Bo3g001110 N 0.802
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.802
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.802
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.802
OS02G0683500 Oryza sativa OS02G0683500 N 0.802
Bra033294 Brassica rapa Bra033294 N 0.802
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.792
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.792
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.792
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.792
Si011823m.g Setaria italica Si011823m.g N 0.792
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.792
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.792
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.792
MDP0000288808 Malus domestica MDP0000288808 N 0.792
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.782
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.782
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.782
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.772
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.772
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.772
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.772
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.768
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.762
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.762
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.762
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.762
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.762
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.762
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.757
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.752
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.752
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.752
OBART10G17010 Oryza barthii OBART10G17010 N 0.752
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.752
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.752
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.752
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.752
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.752
OS10G0537100 Oryza sativa OS10G0537100 N 0.752
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.752
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.750
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.745
OB10G24100 Oryza brachyantha OB10G24100 N 0.744
mgf023686m Mimulus guttatus mgf023686m I 0.743
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.743
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.743
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.742
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.741
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.737
OBART02G28110 Oryza barthii OBART02G28110 N 0.736
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.735
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.733
Bo9g176470 Brassica oleracea Bo9g176470 N 0.733
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.733
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.733
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.733
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.733
Si020241m.g Setaria italica Si020241m.g N 0.733
Si039972m.g Setaria italica Si039972m.g N 0.733
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.733
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.732
TCM_022729 Theobroma cacao TCM_022729 N 0.727
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.724
OLONG_010584 Oryza longistaminata OLONG_010584 I 0.723
mgf019085m Mimulus guttatus mgf019085m N 0.723
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.723
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.723
Bo5g136360 Brassica oleracea Bo5g136360 N 0.723
Bra034828 Brassica rapa Bra034828 N 0.723
Ca_25633 Cicer arietinum Ca_25633 I 0.717
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.717
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.717
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.717
F775_04153 Aegilops tauschii F775_04153 N 0.717
OB12G13420 Oryza brachyantha OB12G13420 N 0.713
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.713
ARF31 Arabidopsis thaliana AT2G36080 N 0.713
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.713
Bo3g064320 Brassica oleracea Bo3g064320 N 0.713
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.713
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.713
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.713
Ca_00826 Cicer arietinum Ca_00826 N 0.713
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.713
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.713
30032.m000462 Ricinus communis 30032.m000462 N 0.713
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.713
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.713
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.711
PK04952.1 Cannabis sativa PK04952.1 I 0.707
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.707
SELMODRAFT_59317 Selaginella moellendorffii SELMODRAFT_59317 N 0.706
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.703
Bra017262 Brassica rapa Bra017262 N 0.703
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.703
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.703
Bra005886 Brassica rapa Bra005886 N 0.703
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.703
Bo01079s020 Brassica oleracea Bo01079s020 N 0.703
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.703
Bo3g003800 Brassica oleracea Bo3g003800 N 0.703
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.703
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.703
Bra001411 Brassica rapa Bra001411 N 0.703
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.703
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.703
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.703
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.703
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.703
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.703
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.703
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.703
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.703
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.703
Si027632m.g Setaria italica Si027632m.g N 0.703
Pavir.Fa01903 Panicum virgatum Pavir.Fa01903 N 0.701
OLONG_022770 Oryza longistaminata OLONG_022770 N 0.700
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.700
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.700
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.700
Traes_2DL_2D1980C7B Triticum aestivum Traes_2DL_2D1980C7B N 0.700
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.700