Ciclev10000693m.g (Citrus clementina)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Ciclev10000693m.g T022926_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.701 0.701
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10000693m B3 122 224
Ciclev10000695m B3 122 224
Ciclev10000696m B3 122 224

Links

Other B3 family TFs
Other Citrus clementina TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 1.000
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.876
MDP0000256621 Malus domestica MDP0000256621 I 0.856
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.845
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.835
29908.m005953 Ricinus communis 29908.m005953 I 0.835
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.835
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.835
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.835
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.825
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.825
TCM_035002 Theobroma cacao TCM_035002 I 0.825
Pm019126 Prunus mume Pm019126 I 0.825
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.825
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.814
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.814
Carubv10019991m.g Capsella rubella Carubv10019991m.g N 0.794
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N 0.794
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.784
ARF17 Arabidopsis thaliana AT1G77850 N 0.784
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.784
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.773
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.773
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.773
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.773
Cla022413 Citrullus lanatus Cla022413 I 0.773
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.765
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.755
Bra003665 Brassica rapa Bra003665 N 0.753
Bo6g081980 Brassica oleracea Bo6g081980 N 0.753
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N 0.753
ARF17 Arabidopsis lyrata scaffold_202748.1 N 0.753
MDP0000232116 Malus domestica MDP0000232116 N 0.745
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.737
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N 0.732
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.722
GLYMA13G02410 Glycine max GLYMA13G02410 N 0.714
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N 0.714
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.711
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.711
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.711
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.711
Bra015651 Brassica rapa Bra015651 N 0.711
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.711
Bo6g121520 Brassica oleracea Bo6g121520 N 0.711
Bra024109 Brassica rapa Bra024109 I 0.711
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N 0.704
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.704
OB06G32920 Oryza brachyantha OB06G32920 I 0.701
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.701
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.701
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.701
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.701
OBART04G18910 Oryza barthii OBART04G18910 I 0.701
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.701
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.701
OBART06G25230 Oryza barthii OBART06G25230 I 0.701
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.701
ARF16 Arabidopsis thaliana AT4G30080 D 0.701
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.701
Bra011162 Brassica rapa Bra011162 I 0.701
Bo7g114200 Brassica oleracea Bo7g114200 I 0.701
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.701
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.701
ARF10 Oryza indica BGIOSGA016767 I 0.701
Bo1g014600 Brassica oleracea Bo1g014600 I 0.701
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.701
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.701
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.701
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.701
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.701
OS04G0519700 Oryza sativa OS04G0519700 I 0.701
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.701
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.701
30078.m002329 Ricinus communis 30078.m002329 I 0.701
ARF18 Oryza sativa OS06G0685700 I 0.701
TCM_022163 Theobroma cacao TCM_022163 I 0.701
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.701
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.701
Si005991m.g Setaria italica Si005991m.g I 0.701
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.701
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.701
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.701
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.701
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.701
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.701
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.701
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.701
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.701
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.701
mgf000336m Mimulus guttatus mgf000336m I 0.701
mgf005300m Mimulus guttatus mgf005300m I 0.701
mgf024607m Mimulus guttatus mgf024607m I 0.701
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.701
Cagra.24523s0002 Capsella grandiflora Cagra.24523s0002 N 0.700