Ciclev10012008m.g (Citrus clementina)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Ciclev10012008m.g T022945_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M01646_2.00
Arabidopsis thaliana
NCACCTGAHN

NDTCAGGTGN
PBM
Weirauch et al.(2014)
pTH8592
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10012008m B3 124 234

Links

Other B3 family TFs
Other Citrus clementina TFs

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 1.000
TCM_022729 Theobroma cacao TCM_022729 N 0.939
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.929
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.919
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.919
Ca_25633 Cicer arietinum Ca_25633 I 0.909
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.909
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.909
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.909
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.899
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.899
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.899
PK04952.1 Cannabis sativa PK04952.1 I 0.899
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.899
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.899
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.891
30032.m000462 Ricinus communis 30032.m000462 N 0.889
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.881
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.879
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.869
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.869
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.869
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.869
Ca_00826 Cicer arietinum Ca_00826 N 0.859
Bra005301 Brassica rapa Bra005301 N 0.859
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.859
Bo4g035110 Brassica oleracea Bo4g035110 N 0.859
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.859
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.848
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.848
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.848
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.848
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.848
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.848
Bra005886 Brassica rapa Bra005886 N 0.848
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.848
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.848
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.848
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.848
ARF31 Arabidopsis thaliana AT2G36080 N 0.848
MDP0000229742 Malus domestica MDP0000229742 N 0.848
OB12G13420 Oryza brachyantha OB12G13420 N 0.848
Bra001411 Brassica rapa Bra001411 N 0.848
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.848
Bra017262 Brassica rapa Bra017262 N 0.848
Cla017937 Citrullus lanatus Cla017937 I 0.842
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.842
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.838
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.838
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.838
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.838
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.838
Bo3g064320 Brassica oleracea Bo3g064320 N 0.838
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.832
Bo3g003800 Brassica oleracea Bo3g003800 N 0.832
Bo01079s020 Brassica oleracea Bo01079s020 N 0.832
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.832
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.828
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.828
Bra034828 Brassica rapa Bra034828 N 0.828
Bo5g136360 Brassica oleracea Bo5g136360 N 0.828
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.828
mgf019085m Mimulus guttatus mgf019085m N 0.828
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.828
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.821
Bo9g176470 Brassica oleracea Bo9g176470 N 0.818
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.818
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.818
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.818
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.818
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.818
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.808
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.808
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.808
OS11G0156000 Oryza sativa OS11G0156000 N 0.808
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.808
OBART11G03590 Oryza barthii OBART11G03590 N 0.808
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.808
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.808
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.808
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.808
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.808
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.808
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.808
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.802
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.802
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.798
Si027632m.g Setaria italica Si027632m.g N 0.798
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.798
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.792
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.788
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.788
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.788
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.788
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.786
OB11G12920 Oryza brachyantha OB11G12920 N 0.782
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.782
Bra041023 Brassica rapa Bra041023 N 0.782
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.778
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.778
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.778
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.778
mgf018965m Mimulus guttatus mgf018965m N 0.778
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.778
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.778
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.778
OBART12G03490 Oryza barthii OBART12G03490 N 0.778
F775_02500 Aegilops tauschii F775_02500 N 0.778
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.778
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.778
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.778
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.772
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.772
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.768
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.768
OB03G11610 Oryza brachyantha OB03G11610 N 0.768
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.768
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.768
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.768
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.768
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.764
PK11025.1 Cannabis sativa PK11025.1 I 0.762
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.762
TCM_005014 Theobroma cacao TCM_005014 I 0.758
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.758
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.758
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.758
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.758
Si036864m.g Setaria italica Si036864m.g N 0.758
Pm024248 Prunus mume Pm024248 I 0.758
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.758
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.758
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.758
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.758
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.758
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.758
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.758
OS04G0581400 Oryza sativa OS04G0581400 I 0.758
OBART04G22880 Oryza barthii OBART04G22880 I 0.758
30076.m004471 Ricinus communis 30076.m004471 I 0.747
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.747
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.747
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.747
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.747
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.747
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.747
TCM_015590 Theobroma cacao TCM_015590 I 0.747
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.747
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.747
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.747
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.747
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.747
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.747
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.747
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.747
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.747
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.747
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.747
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.747
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.747
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.747
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.743
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.743
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.743
OBART03G01650 Oryza barthii OBART03G01650 N 0.743
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.743
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.743
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.743
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.743
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.743
Si010849m.g Setaria italica Si010849m.g N 0.743
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.743
OS03G0120900 Oryza sativa OS03G0120900 N 0.743
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.743
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.743
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.743
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.743
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.737
Bo6g079210 Brassica oleracea Bo6g079210 N 0.737
Bra040478 Brassica rapa Bra040478 I 0.737
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.737
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.737
mgf023769m Mimulus guttatus mgf023769m N 0.737
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.737
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.737
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.737
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.737
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.737
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.737
LPERR11G03050 Leersia perrieri LPERR11G03050 N 0.737
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.737
OS10G0537100 Oryza sativa OS10G0537100 N 0.737
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.737
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.737
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.737
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.737
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.737
Traes_2AL_25382F498 Triticum aestivum Traes_2AL_25382F498 N 0.737
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.737
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.737
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.737
OBART10G17010 Oryza barthii OBART10G17010 N 0.737
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.737
PK21157.1 Cannabis sativa PK21157.1 I 0.737
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.737
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.733
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.733
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.733
Si011823m.g Setaria italica Si011823m.g N 0.733
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.733
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.733
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.730
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.727
F775_31255 Aegilops tauschii F775_31255 N 0.727
Bra000434 Brassica rapa Bra000434 N 0.727
Bo4g197410 Brassica oleracea Bo4g197410 I 0.727
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.727
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.727
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.727
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.727
30068.m002615 Ricinus communis 30068.m002615 I 0.727
Pm028725 Prunus mume Pm028725 N 0.727
Ca_01368 Cicer arietinum Ca_01368 I 0.727
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.727
Cla014858 Citrullus lanatus Cla014858 N 0.727
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.727
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.724
Si020241m.g Setaria italica Si020241m.g N 0.723
Si039972m.g Setaria italica Si039972m.g N 0.723
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.723
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.723
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.723
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.723
Bo3g039420 Brassica oleracea Bo3g039420 N 0.723
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.723
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.723
OB02G35380 Oryza brachyantha OB02G35380 I 0.723
OB10G24100 Oryza brachyantha OB10G24100 N 0.718
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.717
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.717
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.717
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.717
Bra004501 Brassica rapa Bra004501 N 0.717
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.717
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.717
NGA1 Arabidopsis thaliana AT2G46870 N 0.717
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.717
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.716
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.713
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.713
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.713
Cla006845 Citrullus lanatus Cla006845 I 0.713
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.713
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.713
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.713
Bra003482 Brassica rapa Bra003482 N 0.713
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.713
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.707
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.707
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.707
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.707
Bo4g099000 Brassica oleracea Bo4g099000 N 0.707
Bo8g097490 Brassica oleracea Bo8g097490 N 0.707
Bra007646 Brassica rapa Bra007646 N 0.707
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.707
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.707
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.703
OBART02G28100 Oryza barthii OBART02G28100 N 0.703
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.703
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.703
Bo4g006900 Brassica oleracea Bo4g006900 N 0.703
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.703
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.703
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.703
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.703
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.703
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.703
OS02G0683500 Oryza sativa OS02G0683500 N 0.703
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.703
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.701
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.700