Ciclev10027901m.g (Citrus clementina)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Ciclev10027901m.g T022964_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.845 0.845
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027901m B3 113 215

Links

Other B3 family TFs
Other Citrus clementina TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 1.000
Cla008883 Citrullus lanatus Cla008883 I 0.948
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.948
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.921
27494.m000045 Ricinus communis 27494.m000045 I 0.918
27538.m000327 Ricinus communis 27538.m000327 I 0.918
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.918
TCM_042067 Theobroma cacao TCM_042067 I 0.918
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.907
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.907
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.907
Pm031275 Prunus mume Pm031275 I 0.907
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.897
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.897
OB10G20590 Oryza brachyantha OB10G20590 I 0.897
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.897
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.897
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.897
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.897
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.897
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.897
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.897
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.897
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.897
Si034525m.g Setaria italica Si034525m.g I 0.897
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.897
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.897
MDP0000221322 Malus domestica MDP0000221322 I 0.897
MDP0000131481 Malus domestica MDP0000131481 I 0.897
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.897
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.896
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.896
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.896
mgf016139m Mimulus guttatus mgf016139m I 0.896
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.887
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.887
ARF22 Oryza sativa OS10G0479900 I 0.887
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.887
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.887
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.887
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.887
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.887
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.887
Si016509m.g Setaria italica Si016509m.g I 0.887
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.887
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.887
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.887
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.887
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.887
OBART10G13410 Oryza barthii OBART10G13410 I 0.887
F775_32978 Aegilops tauschii F775_32978 I 0.887
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.887
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.887
PK13064.1 Cannabis sativa PK13064.1 I 0.887
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.887
OB02G32150 Oryza brachyantha OB02G32150 I 0.885
Ca_02541 Cicer arietinum Ca_02541 I 0.885
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.876
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.876
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.876
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.876
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.876
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.876
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.876
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.876
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.876
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.876
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.876
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.876
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.876
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.876
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.876
PK17007.1 Cannabis sativa PK17007.1 I 0.876
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.876
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.876
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.876
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.876
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.876
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.876
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.876
Bo4g071620 Brassica oleracea Bo4g071620 I 0.876
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.876
Bra011955 Brassica rapa Bra011955 I 0.876
Ca_26121 Cicer arietinum Ca_26121 I 0.876
Cla018574 Citrullus lanatus Cla018574 I 0.876
Pm030120 Prunus mume Pm030120 I 0.876
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.876
Si005991m.g Setaria italica Si005991m.g I 0.876
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.876
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.876
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.876
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.876
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.876
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.876
OBART06G25230 Oryza barthii OBART06G25230 I 0.876
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.876
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.876
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.876
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.876
OB06G32920 Oryza brachyantha OB06G32920 I 0.876
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.876
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.876
ARF18 Oryza sativa OS06G0685700 I 0.876
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.876
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.876
ARF8 Oryza sativa OS02G0628600 I 0.876
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.876
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.876
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.875
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.874
ARF10 Arabidopsis thaliana AT2G28350 I 0.866
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.866
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.866
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.866
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.866
TCM_043157 Theobroma cacao TCM_043157 I 0.866
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.866
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.866
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.866
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.866
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.866
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.866
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.866
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.866
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.866
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.866
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.866
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.866
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.866
TCM_022163 Theobroma cacao TCM_022163 I 0.866
30078.m002329 Ricinus communis 30078.m002329 I 0.866
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.865
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.856
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.856
mgf005300m Mimulus guttatus mgf005300m I 0.856
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.856
Bra011162 Brassica rapa Bra011162 I 0.856
PK13393.1 Cannabis sativa PK13393.1 I 0.856
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.856
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.845
MDP0000750392 Malus domestica MDP0000750392 I 0.845
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.845
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.845
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.845
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.845
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.845
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.845
ARF16 Arabidopsis thaliana AT4G30080 D 0.845
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.845
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.845
Ca_17136 Cicer arietinum Ca_17136 I 0.845
Bo7g114200 Brassica oleracea Bo7g114200 I 0.845
Pm018533 Prunus mume Pm018533 I 0.845
Bo1g014600 Brassica oleracea Bo1g014600 I 0.845
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.845
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.845
mgf000336m Mimulus guttatus mgf000336m I 0.845
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.845
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.845
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.845
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.835
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.835
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.835
Bra024109 Brassica rapa Bra024109 I 0.835
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.835
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.835
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.835
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.835
mgf024607m Mimulus guttatus mgf024607m I 0.835
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.835
Cla013979 Citrullus lanatus Cla013979 I 0.835
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.825
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.825
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.825
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.814
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.814
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.814
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.806
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.804
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.792
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.792
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.792
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.783
ARF10 Oryza indica BGIOSGA016767 I 0.773
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.773
OBART04G18910 Oryza barthii OBART04G18910 I 0.773
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.773
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.773
OS04G0519700 Oryza sativa OS04G0519700 I 0.773
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.773
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.773
PK10136.1 Cannabis sativa PK10136.1 I 0.763
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.763
OB04G25990 Oryza brachyantha OB04G25990 I 0.753
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.753
Si009541m.g Setaria italica Si009541m.g I 0.753
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.745
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.740
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.739
OBART02G24860 Oryza barthii OBART02G24860 I 0.733
Ca_08488 Cicer arietinum Ca_08488 I 0.732
OB09G15010 Oryza brachyantha OB09G15010 N 0.711
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.711
TCM_035002 Theobroma cacao TCM_035002 I 0.701
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.701
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.701
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.701
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.701
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.701