Gorai.003G142500 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.003G142500 T023317_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.865 0.865
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G142500.1 B3 108 210
Gorai.003G142500.2 B3 108 210
Gorai.003G142500.3 B3 108 210

Links

Other B3 family TFs
Other Gossypium raimondii TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.928
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.927
mgf016139m Mimulus guttatus mgf016139m I 0.927
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.927
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.927
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.927
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.918
TCM_042067 Theobroma cacao TCM_042067 I 0.918
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.918
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.918
Cla018574 Citrullus lanatus Cla018574 I 0.918
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.918
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.918
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.918
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.918
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.918
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.918
Pm030120 Prunus mume Pm030120 I 0.918
PK17007.1 Cannabis sativa PK17007.1 I 0.918
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.918
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.918
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.917
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.917
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.917
27538.m000327 Ricinus communis 27538.m000327 I 0.917
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.917
MDP0000131481 Malus domestica MDP0000131481 I 0.907
Pm031275 Prunus mume Pm031275 I 0.907
mgf005300m Mimulus guttatus mgf005300m I 0.907
30078.m002329 Ricinus communis 30078.m002329 I 0.907
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.907
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.907
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.907
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.907
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.907
MDP0000221322 Malus domestica MDP0000221322 I 0.907
TCM_022163 Theobroma cacao TCM_022163 I 0.907
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.907
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.907
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.906
Ca_02541 Cicer arietinum Ca_02541 I 0.906
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.906
Bra011955 Brassica rapa Bra011955 I 0.906
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.906
Bo4g071620 Brassica oleracea Bo4g071620 I 0.906
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.906
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.906
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.906
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.906
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.906
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.897
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.897
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.897
Si034525m.g Setaria italica Si034525m.g I 0.897
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.897
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.897
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.897
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.897
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.897
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.897
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.897
Si016509m.g Setaria italica Si016509m.g I 0.896
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.896
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.896
F775_32978 Aegilops tauschii F775_32978 I 0.896
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.896
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.896
OB10G20590 Oryza brachyantha OB10G20590 I 0.896
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.896
ARF10 Arabidopsis thaliana AT2G28350 I 0.896
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.896
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.887
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.887
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.887
Ca_26121 Cicer arietinum Ca_26121 I 0.887
Ca_17136 Cicer arietinum Ca_17136 I 0.887
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.887
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.887
MDP0000750392 Malus domestica MDP0000750392 I 0.887
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.887
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.887
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.887
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.887
OBART06G25230 Oryza barthii OBART06G25230 I 0.887
Si005991m.g Setaria italica Si005991m.g I 0.887
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.887
OB06G32920 Oryza brachyantha OB06G32920 I 0.887
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.887
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.887
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.887
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.887
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.887
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.887
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.887
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.887
ARF18 Oryza sativa OS06G0685700 I 0.887
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.887
ARF8 Oryza sativa OS02G0628600 I 0.885
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.885
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.885
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.885
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.885
TCM_043157 Theobroma cacao TCM_043157 I 0.885
OB02G32150 Oryza brachyantha OB02G32150 I 0.885
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.885
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.885
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.885
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.885
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.885
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.885
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.882
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.876
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.876
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.876
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.876
Cla008883 Citrullus lanatus Cla008883 I 0.876
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.876
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.876
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.876
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.876
ARF22 Oryza sativa OS10G0479900 I 0.876
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.876
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.876
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.876
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.876
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.876
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.876
OBART10G13410 Oryza barthii OBART10G13410 I 0.876
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.876
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.876
mgf000336m Mimulus guttatus mgf000336m I 0.875
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.875
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.875
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.875
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.875
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.875
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.875
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.875
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.874
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.866
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.866
PK13064.1 Cannabis sativa PK13064.1 I 0.866
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.866
Bra011162 Brassica rapa Bra011162 I 0.866
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.865
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.865
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.865
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.865
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.865
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.865
ARF16 Arabidopsis thaliana AT4G30080 D 0.865
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.865
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.856
Pm018533 Prunus mume Pm018533 I 0.856
mgf024607m Mimulus guttatus mgf024607m I 0.856
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.856
Bo1g014600 Brassica oleracea Bo1g014600 I 0.856
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.856
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.854
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.854
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.854
27494.m000045 Ricinus communis 27494.m000045 I 0.854
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.854
Bo7g114200 Brassica oleracea Bo7g114200 I 0.854
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.854
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.845
Cla013979 Citrullus lanatus Cla013979 I 0.845
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.844
Bra024109 Brassica rapa Bra024109 I 0.835
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.835
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.833
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.827
Ca_08488 Cicer arietinum Ca_08488 I 0.824
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.823
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.823
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.814
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.814
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.814
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.814
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.806
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.804
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.802
PK13393.1 Cannabis sativa PK13393.1 I 0.786
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.786
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.781
OS04G0519700 Oryza sativa OS04G0519700 I 0.781
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.781
ARF10 Oryza indica BGIOSGA016767 I 0.781
OBART04G18910 Oryza barthii OBART04G18910 I 0.781
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.781
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.781
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.776
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.773
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.763
Si009541m.g Setaria italica Si009541m.g I 0.763
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.754
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.750
OB04G25990 Oryza brachyantha OB04G25990 I 0.750
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.750
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.740
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.739
TCM_029792 Theobroma cacao TCM_029792 I 0.736
OBART02G24860 Oryza barthii OBART02G24860 I 0.733
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.722
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.719
PK10136.1 Cannabis sativa PK10136.1 I 0.719
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.711
Cla022413 Citrullus lanatus Cla022413 I 0.711
Ca_17624 Cicer arietinum Ca_17624 I 0.711
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.710
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.708
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.701
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.701
29908.m005953 Ricinus communis 29908.m005953 I 0.701
Pm019126 Prunus mume Pm019126 I 0.701