CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.007G131900
(
Gossypium raimondii
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Gorai.007G131900
T023347_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF2
M06714_2.00
Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN
Dap-seq
OMalley et al.(2016)
ARF2_col_v31
0.714
0.714
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.007G131900.1
B3
145
248
FSKKLTPSDTSTHGGFSIPKRHVDDGCLPPLDMSQQTPQQELVAIDLHGFEWRFRHIYRGQPKRHLLTSGWSTFLTSKKLLAGDEFIFLRGEKGELRLGIRRAT
Links
Other
B3
family TFs
Other
Gossypium raimondii
TFs
187 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_004526
Theobroma cacao
TCM_004526
I
0.837
PK04762.1
Cannabis sativa
PK04762.1
I
0.796
PRUPE_ppa022314mg
Prunus persica
PRUPE_ppa022314mg
I
0.776
VIT_07s0104g01230
Vitis vinifera
VIT_07s0104g01230
I
0.776
Pm019941
Prunus mume
Pm019941
I
0.765
POPTR_0014s12980
Populus trichocarpa
POPTR_0014s12980
I
0.765
Ciclev10019257m.g
Citrus clementina
Ciclev10019257m.g
I
0.763
orange1.1g005060m.g
Citrus sinensis
orange1.1g005060m.g
I
0.763
XM_002320618.1
Populus trichocarpa
POPTR_0020s00210
I
0.755
MDP0000123466
Malus domestica
MDP0000123466
I
0.755
TCM_029792
Theobroma cacao
TCM_029792
I
0.755
GLYMA19G39340
Glycine max
GLYMA19G39340
N
0.747
Cucsa.156920
Cucumis sativus
Cucsa.156920
I
0.746
POPTR_0004s23770
Populus trichocarpa
POPTR_0004s23770
I
0.735
TCM_008374
Theobroma cacao
TCM_008374
I
0.735
ARF1
Vitis vinifera
VIT_12s0035g01800
I
0.735
PK12669.1
Cannabis sativa
PK12669.1
I
0.735
SapurV1A.0422s0040
Salix purpurea
SapurV1A.0422s0040
I
0.735
VIT_01s0244g00150
Vitis vinifera
VIT_01s0244g00150
I
0.735
Ciclev10030696m.g
Citrus clementina
Ciclev10030696m.g
I
0.732
Eucgr.K02197
Eucalyptus grandis
Eucgr.K02197
I
0.732
GLYMA16G00220
Glycine max
GLYMA16G00220
I
0.732
Traes_3DL_1FC3735D9
Triticum aestivum
Traes_3DL_1FC3735D9
I
0.732
MDP0000929655
Malus domestica
MDP0000929655
I
0.732
MTR_2g005240
Medicago truncatula
MTR_2g005240
I
0.732
LjSGA_022281.1
Lotus japonicus
LjSGA_022281.1
I
0.732
orange1.1g005491m.g
Citrus sinensis
orange1.1g005491m.g
I
0.725
chr4.CM0175.280.nc
Lotus japonicus
chr4.CM0175.280.nc
I
0.724
mgf006511m
Mimulus guttatus
mgf006511m
I
0.724
mgf020855m
Mimulus guttatus
mgf020855m
I
0.724
Aquca_003_00899
Aquilegia coerulea
Aquca_003_00899
I
0.724
MTR_8g100050
Medicago truncatula
MTR_8g100050
I
0.724
mgf015308m
Mimulus guttatus
mgf015308m
I
0.724
ARF2
Vitis vinifera
VIT_17s0000g00320
I
0.724
POPTR_0015s11660
Populus trichocarpa
POPTR_0015s11660
I
0.724
orange1.1g004106m.g
Citrus sinensis
orange1.1g004106m.g
I
0.724
AMTR_s00021p00200760
Amborella trichopoda
AMTR_s00021p00200760
I
0.724
POPTR_0012s10790
Populus trichocarpa
POPTR_0012s10790
I
0.724
GLYMA03G41920
Glycine max
GLYMA03G41920
I
0.724
MDP0000258032
Malus domestica
MDP0000258032
I
0.724
Cla019614
Citrullus lanatus
Cla019614
I
0.724
Solyc03g118290.2
Solanum lycopersicum
Solyc03g118290.2
I
0.724
PK16974.1
Cannabis sativa
PK16974.1
I
0.724
GSMUA_Achr10G12070_001
Musa acuminata
GSMUA_Achr10G12070_001
I
0.724
GLYMA13G24240
Glycine max
GLYMA13G24240
I
0.724
Gorai.008G210200
Gossypium raimondii
Gorai.008G210200
I
0.724
Eucgr.B03551
Eucalyptus grandis
Eucgr.B03551
I
0.724
gene06434-v1.0-hybrid
Fragaria vesca
gene06434-v1.0-hybrid
I
0.724
GSMUA_Achr6G08090_001
Musa acuminata
GSMUA_Achr6G08090_001
I
0.724
Gorai.001G054600
Gossypium raimondii
Gorai.001G054600
I
0.724
GRMZM2G116557
Zea mays
GRMZM2G116557
I
0.724
GLYMA07G32300
Glycine max
GLYMA07G32300
I
0.724
Ciclev10014391m.g
Citrus clementina
Ciclev10014391m.g
I
0.724
TCM_027113
Theobroma cacao
TCM_027113
I
0.722
PDK_20s1477241g001
Phoenix dactylifera
PDK_20s1477241g001
I
0.722
PDK_20s1651081g001
Phoenix dactylifera
PDK_20s1651081g001
I
0.721
Traes_3DL_BC7A7E056
Triticum aestivum
Traes_3DL_BC7A7E056
I
0.718
ARF2
Arabidopsis thaliana
AT5G62000
D
0.714
Carubv10025860m.g
Capsella rubella
Carubv10025860m.g
I
0.714
Bra035910
Brassica rapa
Bra035910
I
0.714
F775_31280
Aegilops tauschii
F775_31280
I
0.714
gene27792-v1.0-hybrid
Fragaria vesca
gene27792-v1.0-hybrid
N
0.714
MDP0000412781
Malus domestica
MDP0000412781
I
0.714
orange1.1g004792m.g
Citrus sinensis
orange1.1g004792m.g
I
0.714
Bo2g161810
Brassica oleracea
Bo2g161810
I
0.714
Solyc12g042070.1
Solanum lycopersicum
Solyc12g042070.1
I
0.714
Bostr.26833s0038
Boechera stricta
Bostr.26833s0038
I
0.714
TCM_014743
Theobroma cacao
TCM_014743
I
0.714
Cagra.4553s0009
Capsella grandiflora
Cagra.4553s0009
I
0.714
Gorai.010G157400
Gossypium raimondii
Gorai.010G157400
I
0.714
ARF23
Oryza indica
BGIOSGA033901
I
0.714
AMTR_s00057p00141830
Amborella trichopoda
AMTR_s00057p00141830
I
0.714
29900.m001540
Ricinus communis
29900.m001540
I
0.714
cassava1599.valid.m1
Manihot esculenta
cassava1599.valid.m1
I
0.714
cassava17839.valid.m1
Manihot esculenta
cassava17839.valid.m1
I
0.714
Lus10043200.g
Linum usitatissimum
Lus10043200.g
I
0.714
cassava17840.valid.m1
Manihot esculenta
cassava17840.valid.m1
I
0.714
Pm024588
Prunus mume
Pm024588
I
0.714
Lus10032541.g
Linum usitatissimum
Lus10032541.g
I
0.714
Gorai.009G166100
Gossypium raimondii
Gorai.009G166100
I
0.714
ETT
Vitis vinifera
VIT_10s0003g00420
I
0.714
Lus10013942.g
Linum usitatissimum
Lus10013942.g
I
0.714
Ca_05681
Cicer arietinum
Ca_05681
I
0.714
Gorai.011G030900
Gossypium raimondii
Gorai.011G030900
I
0.714
MDP0000310875
Malus domestica
MDP0000310875
I
0.714
cassava37256.valid.m1
Manihot esculenta
cassava37256.valid.m1
I
0.714
Sb08g014320
Sorghum bicolor
Sb08g014320
I
0.714
OBART11G15270
Oryza barthii
OBART11G15270
I
0.714
OGLUM11G14710
Oryza glumaepatula
OGLUM11G14710
I
0.714
OB11G21910
Oryza brachyantha
OB11G21910
I
0.714
MTR_4g088210
Medicago truncatula
MTR_4g088210
I
0.714
MTR_2g014770
Medicago truncatula
MTR_2g014770
I
0.714
OLONG_022378
Oryza longistaminata
OLONG_022378
I
0.714
OMERI11G12590
Oryza meridionalis
OMERI11G12590
I
0.714
SapurV1A.0672s0210
Salix purpurea
SapurV1A.0672s0210
I
0.714
SapurV1A.0774s0040
Salix purpurea
SapurV1A.0774s0040
I
0.714
Pavir.Cb00753
Panicum virgatum
Pavir.Cb00753
I
0.714
Thhalv10003641m.g
Eutrema salsugineum
Thhalv10003641m.g
I
0.714
LPERR12G09930
Leersia perrieri
LPERR12G09930
I
0.714
LPERR11G11950
Leersia perrieri
LPERR11G11950
I
0.714
GLYMA15G08540
Glycine max
GLYMA15G08540
I
0.714
GLYMA13G30750
Glycine max
GLYMA13G30750
I
0.714
GLYMA08G01100
Glycine max
GLYMA08G01100
I
0.714
GLYMA05G38540
Glycine max
GLYMA05G38540
I
0.714
GLYMA03G36710
Glycine max
GLYMA03G36710
N
0.714
GRMZM2G006042
Zea mays
GRMZM2G006042
I
0.714
LjSGA_059669.1
Lotus japonicus
LjSGA_059669.1
I
0.714
LjSGA_068216.1
Lotus japonicus
LjSGA_068216.1
I
0.714
GRMZM2G352159
Zea mays
GRMZM2G352159
I
0.714
GRMZM2G338259
Zea mays
GRMZM2G338259
I
0.714
SapurV1A.0517s0240
Salix purpurea
SapurV1A.0517s0240
I
0.714
ONIVA12G10760
Oryza nivara
ONIVA12G10760
I
0.714
Bra010048
Brassica rapa
Bra010048
I
0.714
Pavir.Ea03860
Panicum virgatum
Pavir.Ea03860
I
0.714
Pavir.J11622
Panicum virgatum
Pavir.J11622
I
0.714
PGSC0003DMG400014452
Solanum tuberosum
PGSC0003DMG400014452
I
0.714
Bo9g014770
Brassica oleracea
Bo9g014770
I
0.714
PRUPE_ppa001392mg
Prunus persica
PRUPE_ppa001392mg
I
0.714
Pavir.Eb03734
Panicum virgatum
Pavir.Eb03734
I
0.714
Sb03g044630
Sorghum bicolor
Sb03g044630
I
0.714
gene29771-v1.0-hybrid
Fragaria vesca
gene29771-v1.0-hybrid
I
0.714
Bo3g108130
Brassica oleracea
Bo3g108130
I
0.714
ARF2
Arabidopsis lyrata
scaffold_802850.1
I
0.714
ORGLA11G0129300
Oryza glaberrima
ORGLA11G0129300
I
0.714
Si021216m.g
Setaria italica
Si021216m.g
I
0.714
OPUNC11G12650
Oryza punctata
OPUNC11G12650
I
0.714
ORUFI11G16290
Oryza rufipogon
ORUFI11G16290
I
0.714
OS11G0523800
Oryza sativa
OS11G0523800
I
0.714
PGSC0003DMG400014179
Solanum tuberosum
PGSC0003DMG400014179
I
0.714
Si000340m.g
Setaria italica
Si000340m.g
I
0.714
PGSC0003DMG400020711
Solanum tuberosum
PGSC0003DMG400020711
I
0.711
PDK_20s1585531g001
Phoenix dactylifera
PDK_20s1585531g001
I
0.704
Gorai.006G120400
Gossypium raimondii
Gorai.006G120400
I
0.704
LjSGA_059323.1
Lotus japonicus
LjSGA_059323.1
I
0.704
BRADI2G59480
Brachypodium distachyon
BRADI2G59480
I
0.704
BRADI4G17410
Brachypodium distachyon
BRADI4G17410
I
0.704
MDP0000179650
Malus domestica
MDP0000179650
I
0.704
Lus10005264.g
Linum usitatissimum
Lus10005264.g
I
0.704
PK18282.1
Cannabis sativa
PK18282.1
I
0.704
Pavir.J08401
Panicum virgatum
Pavir.J08401
I
0.704
MDP0000173151
Malus domestica
MDP0000173151
I
0.704
LjSGA_103336.1
Lotus japonicus
LjSGA_103336.1
I
0.704
F775_32662
Aegilops tauschii
F775_32662
I
0.704
OPUNC05G23380
Oryza punctata
OPUNC05G23380
I
0.704
OPUNC01G41560
Oryza punctata
OPUNC01G41560
I
0.704
ONIVA05G27700
Oryza nivara
ONIVA05G27700
I
0.704
OGLUM05G27420
Oryza glumaepatula
OGLUM05G27420
I
0.704
OPUNC05G23400
Oryza punctata
OPUNC05G23400
I
0.704
ORGLA05G0222700
Oryza glaberrima
ORGLA05G0222700
I
0.704
PRUPE_ppa002065m1g
Prunus persica
PRUPE_ppa002065m1g
I
0.704
PRUPE_ppa001557mg
Prunus persica
PRUPE_ppa001557mg
I
0.704
GLYMA03G17450
Glycine max
GLYMA03G17450
I
0.704
OGLUM01G46840
Oryza glumaepatula
OGLUM01G46840
I
0.704
OBART05G25790
Oryza barthii
OBART05G25790
I
0.704
GSMUA_Achr10G15100_001
Musa acuminata
GSMUA_Achr10G15100_001
I
0.704
GRMZM2G030710
Zea mays
GRMZM2G030710
I
0.704
GLYMA06G17320
Glycine max
GLYMA06G17320
I
0.704
GLYMA04G37760
Glycine max
GLYMA04G37760
I
0.704
GSMUA_AchrUn_randomG14770_001
Musa acuminata
GSMUA_AchrUn_randomG14770_001
I
0.704
LPERR05G21420
Leersia perrieri
LPERR05G21420
I
0.704
OB12G20020
Oryza brachyantha
OB12G20020
I
0.704
MTR_4g021580
Medicago truncatula
MTR_4g021580
I
0.704
MLOC_68907
Hordeum vulgare
MLOC_68907
I
0.704
Sb09g028450
Sorghum bicolor
Sb09g028450
I
0.704
Si021595m.g
Setaria italica
Si021595m.g
I
0.704
cassava830.valid.m1
Manihot esculenta
cassava830.valid.m1
I
0.704
cassava6009.valid.m1
Manihot esculenta
cassava6009.valid.m1
I
0.704
cassava32762.m1
Manihot esculenta
cassava32762.m1
I
0.704
30111.m000734
Ricinus communis
30111.m000734
I
0.704
Cucsa.114840
Cucumis sativus
Cucsa.114840
I
0.704
Aquca_051_00062
Aquilegia coerulea
Aquca_051_00062
I
0.704
evm.TU.supercontig_7.3
Carica papaya
evm.TU.supercontig_7.3
I
0.704
evm.TU.supercontig_139.80
Carica papaya
evm.TU.supercontig_139.80
I
0.704
Eucgr.G00076
Eucalyptus grandis
Eucgr.G00076
I
0.704
Eucgr.B02480
Eucalyptus grandis
Eucgr.B02480
I
0.704
Pm031349
Prunus mume
Pm031349
I
0.704
BGIOSGA020357
Oryza indica
BGIOSGA020357
I
0.704
TCM_041071
Theobroma cacao
TCM_041071
I
0.704
ARF9
Arabidopsis lyrata
Al_scaffold_0007_1752
I
0.704
GLYMA01G25270
Glycine max
GLYMA01G25270
I
0.704
TCM_005126
Theobroma cacao
TCM_005126
I
0.704
TRAES3BF001100080CFD_g
Triticum aestivum
TRAES3BF001100080CFD_g
I
0.704
ARF4
Vitis vinifera
VIT_06s0004g03130
I
0.704
Pm000994
Prunus mume
Pm000994
I
0.704
Ca_06352
Cicer arietinum
Ca_06352
I
0.704
gene28545-v1.0-hybrid
Fragaria vesca
gene28545-v1.0-hybrid
I
0.704
AMTR_s00016p00168950
Amborella trichopoda
AMTR_s00016p00168950
I
0.701