Gorai.008G132400 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.008G132400 T023365_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.740 0.740
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G132400.1 B3 118 222

Links

Other B3 family TFs
Other Gossypium raimondii TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.929
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.929
30076.m004471 Ricinus communis 30076.m004471 I 0.920
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.920
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.911
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.911
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.911
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.910
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.910
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.910
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.901
TCM_005014 Theobroma cacao TCM_005014 I 0.901
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.901
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.900
Pm024248 Prunus mume Pm024248 I 0.900
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.900
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.900
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.900
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.892
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.891
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.891
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.891
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.891
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.890
TCM_015590 Theobroma cacao TCM_015590 I 0.890
MLOC_48938 Hordeum vulgare MLOC_48938 N 0.886
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.881
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.881
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.881
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.881
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.881
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.881
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.881
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.881
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.880
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.880
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.871
PK11025.1 Cannabis sativa PK11025.1 I 0.871
Ca_01368 Cicer arietinum Ca_01368 I 0.871
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.871
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.871
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.871
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.871
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.870
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.869
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.861
OB03G11610 Oryza brachyantha OB03G11610 N 0.860
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.854
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.851
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.851
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.851
mgf023769m Mimulus guttatus mgf023769m N 0.851
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.851
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.851
OB02G35380 Oryza brachyantha OB02G35380 I 0.851
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.850
OBART03G01650 Oryza barthii OBART03G01650 N 0.842
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.842
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.842
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.842
OBART04G22880 Oryza barthii OBART04G22880 I 0.842
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.842
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.842
OS03G0120900 Oryza sativa OS03G0120900 N 0.842
OS04G0581400 Oryza sativa OS04G0581400 I 0.842
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.842
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.842
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.842
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.842
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.842
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.842
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.842
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.842
PK21157.1 Cannabis sativa PK21157.1 I 0.842
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.842
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.842
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.842
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.840
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.840
Si036864m.g Setaria italica Si036864m.g N 0.840
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.840
Si011823m.g Setaria italica Si011823m.g N 0.832
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.832
30068.m002615 Ricinus communis 30068.m002615 I 0.832
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.830
MDP0000128295 Malus domestica MDP0000128295 N 0.830
Bra040478 Brassica rapa Bra040478 I 0.830
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.830
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.830
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.822
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.822
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.822
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.822
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.822
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.822
OS02G0683500 Oryza sativa OS02G0683500 N 0.822
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.822
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.822
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.822
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.822
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.822
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.822
OBART02G28100 Oryza barthii OBART02G28100 N 0.822
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.822
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.822
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.821
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.820
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.820
NGA1 Arabidopsis thaliana AT2G46870 N 0.820
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.820
Bo4g197410 Brassica oleracea Bo4g197410 I 0.820
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.820
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.820
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.812
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.812
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.812
Bo3g039420 Brassica oleracea Bo3g039420 N 0.812
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.812
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.812
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.812
NGA3 Arabidopsis thaliana AT1G01030 N 0.812
Pm028725 Prunus mume Pm028725 N 0.812
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.812
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.812
MDP0000138163 Malus domestica MDP0000138163 N 0.812
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.812
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.812
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.810
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.808
Cla005055 Citrullus lanatus Cla005055 N 0.806
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.802
Bra004501 Brassica rapa Bra004501 N 0.802
Bo5g002790 Brassica oleracea Bo5g002790 N 0.802
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.802
Bo3g001110 Brassica oleracea Bo3g001110 N 0.802
Bo4g006900 Brassica oleracea Bo4g006900 N 0.802
Bra030497 Brassica rapa Bra030497 N 0.802
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.802
Bo8g097490 Brassica oleracea Bo8g097490 N 0.800
Bra007646 Brassica rapa Bra007646 N 0.800
Bra000434 Brassica rapa Bra000434 N 0.800
Cla014858 Citrullus lanatus Cla014858 N 0.798
Bra014415 Brassica rapa Bra014415 N 0.792
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.792
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.792
MDP0000288808 Malus domestica MDP0000288808 N 0.792
Bo6g079210 Brassica oleracea Bo6g079210 N 0.790
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.785
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.784
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.782
NGA2 Arabidopsis thaliana AT3G61970 N 0.782
Si020241m.g Setaria italica Si020241m.g N 0.782
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.782
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.782
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.782
Bra033294 Brassica rapa Bra033294 N 0.782
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.782
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.782
Bo4g099000 Brassica oleracea Bo4g099000 N 0.782
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.782
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.780
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.776
OBART02G28110 Oryza barthii OBART02G28110 N 0.774
Bra003482 Brassica rapa Bra003482 N 0.772
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.772
Cla006845 Citrullus lanatus Cla006845 I 0.772
OBART10G17010 Oryza barthii OBART10G17010 N 0.770
OS10G0537100 Oryza sativa OS10G0537100 N 0.770
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.770
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.770
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.770
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.770
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.770
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.770
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.770
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.762
mgf023686m Mimulus guttatus mgf023686m I 0.760
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.755
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.752
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.750
NGA4 Arabidopsis lyrata scaffold_604140.1 I 0.750
OLONG_022770 Oryza longistaminata OLONG_022770 N 0.750
Traes_2DL_2D1980C7B Triticum aestivum Traes_2DL_2D1980C7B N 0.750
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.750
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.747
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.745
OLONG_010584 Oryza longistaminata OLONG_010584 I 0.745
OB10G24100 Oryza brachyantha OB10G24100 N 0.744
Si039972m.g Setaria italica Si039972m.g N 0.743
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.743
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.743
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.743
F775_04153 Aegilops tauschii F775_04153 N 0.740
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.736
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.733
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.733
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.733
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.733
Eucgr.G02345 Eucalyptus grandis Eucgr.G02345 I 0.729
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.723
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.723
OB05G32250 Oryza brachyantha OB05G32250 I 0.723
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.723
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.723
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.723
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.723
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.720
OPUNC07G09160 Oryza punctata OPUNC07G09160 N 0.720
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.720
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.717
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.717
GSMUA_Achr4G30170_001 Musa acuminata GSMUA_Achr4G30170_001 N 0.717
TCM_022729 Theobroma cacao TCM_022729 N 0.717
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.713
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.713
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.713
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.713
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.713
Cla017937 Citrullus lanatus Cla017937 I 0.713
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.713
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.713
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.713
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.713
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.711
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.710
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.710
NGA4 Arabidopsis thaliana AT4G01500 D 0.710
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.710
Bra009171 Brassica rapa Bra009171 N 0.707
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.707
Bo00853s090 Brassica oleracea Bo00853s090 I 0.705
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.704
F775_20738 Aegilops tauschii F775_20738 I 0.703
mgf019085m Mimulus guttatus mgf019085m N 0.703
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.703
OB12G13420 Oryza brachyantha OB12G13420 N 0.703
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.703
Bo9g176470 Brassica oleracea Bo9g176470 N 0.703
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.703
OB01G36520 Oryza brachyantha OB01G36520 I 0.701
PK04952.1 Cannabis sativa PK04952.1 I 0.700
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.700
Traes_4DL_59B1C9052 Triticum aestivum Traes_4DL_59B1C9052 I 0.700
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.700
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.700
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.700
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.700