Lus10016091.g (Linum usitatissimum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Lus10016091.g T023482_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016091 B3 108 210

Links

Other B3 family TFs
Other Linum usitatissimum TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.990
Ca_02541 Cicer arietinum Ca_02541 I 0.948
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.938
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.928
27538.m000327 Ricinus communis 27538.m000327 I 0.927
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.927
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.927
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.918
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.918
MDP0000221322 Malus domestica MDP0000221322 I 0.918
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.918
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.918
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.918
Ca_26121 Cicer arietinum Ca_26121 I 0.918
MDP0000131481 Malus domestica MDP0000131481 I 0.918
Si034525m.g Setaria italica Si034525m.g I 0.918
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.918
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.918
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.917
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.917
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.917
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.917
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.917
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.917
Pm031275 Prunus mume Pm031275 I 0.917
F775_32978 Aegilops tauschii F775_32978 I 0.917
OB10G20590 Oryza brachyantha OB10G20590 I 0.917
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.908
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.907
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.907
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.907
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.907
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.907
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.907
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.907
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.906
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.906
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.906
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.906
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.906
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.906
Pm030120 Prunus mume Pm030120 I 0.906
Cla018574 Citrullus lanatus Cla018574 I 0.906
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.906
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.906
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.906
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.906
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.906
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.906
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.897
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.897
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.897
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.897
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.897
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.897
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.897
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.897
Si005991m.g Setaria italica Si005991m.g I 0.897
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.897
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.897
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.897
ARF18 Oryza sativa OS06G0685700 I 0.897
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.897
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.897
TCM_042067 Theobroma cacao TCM_042067 I 0.897
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.897
ARF22 Oryza sativa OS10G0479900 I 0.897
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.897
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.897
OBART06G25230 Oryza barthii OBART06G25230 I 0.897
OB06G32920 Oryza brachyantha OB06G32920 I 0.897
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.897
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.897
OBART10G13410 Oryza barthii OBART10G13410 I 0.897
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.897
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.896
TCM_043157 Theobroma cacao TCM_043157 I 0.896
ARF10 Arabidopsis thaliana AT2G28350 I 0.896
OB02G32150 Oryza brachyantha OB02G32150 I 0.896
Si016509m.g Setaria italica Si016509m.g I 0.896
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.896
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.896
Bo4g071620 Brassica oleracea Bo4g071620 I 0.896
mgf016139m Mimulus guttatus mgf016139m I 0.896
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.895
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.887
TCM_022163 Theobroma cacao TCM_022163 I 0.887
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.887
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.887
PK17007.1 Cannabis sativa PK17007.1 I 0.887
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.887
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.887
mgf024607m Mimulus guttatus mgf024607m I 0.887
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.887
30078.m002329 Ricinus communis 30078.m002329 I 0.887
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.887
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.887
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.887
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.887
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.887
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.885
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.885
Bra011955 Brassica rapa Bra011955 I 0.885
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.885
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.885
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.885
ARF8 Oryza sativa OS02G0628600 I 0.885
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.885
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.885
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.885
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.885
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.885
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.885
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.885
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.885
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.885
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.885
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.885
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.885
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.885
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.885
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.876
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.876
Cla008883 Citrullus lanatus Cla008883 I 0.876
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.876
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.876
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.876
Bra011162 Brassica rapa Bra011162 I 0.876
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.876
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.876
mgf005300m Mimulus guttatus mgf005300m I 0.876
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.876
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.876
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.875
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.875
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.875
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.875
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.875
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.875
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.875
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.875
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.875
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.875
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.875
ARF16 Arabidopsis thaliana AT4G30080 D 0.875
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.875
Bo7g114200 Brassica oleracea Bo7g114200 I 0.875
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.875
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.875
PK13064.1 Cannabis sativa PK13064.1 I 0.866
Bo1g014600 Brassica oleracea Bo1g014600 I 0.866
MDP0000750392 Malus domestica MDP0000750392 I 0.866
Pm018533 Prunus mume Pm018533 I 0.866
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.866
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.866
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.866
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.865
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.865
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.865
27494.m000045 Ricinus communis 27494.m000045 I 0.865
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.865
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.856
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.856
Ca_17136 Cicer arietinum Ca_17136 I 0.856
Bra024109 Brassica rapa Bra024109 I 0.856
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.854
Cla013979 Citrullus lanatus Cla013979 I 0.845
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.845
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.844
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.835
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.833
mgf000336m Mimulus guttatus mgf000336m I 0.833
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.814
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.814
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.814
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.814
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.814
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.812
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.812
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.812
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.806
ARF10 Oryza indica BGIOSGA016767 I 0.792
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.792
PK13393.1 Cannabis sativa PK13393.1 I 0.792
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.792
OS04G0519700 Oryza sativa OS04G0519700 I 0.792
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.792
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.792
OBART04G18910 Oryza barthii OBART04G18910 I 0.792
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.784
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.783
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.776
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.765
Ca_08488 Cicer arietinum Ca_08488 I 0.760
TCM_029792 Theobroma cacao TCM_029792 I 0.755
Si009541m.g Setaria italica Si009541m.g I 0.753
OB04G25990 Oryza brachyantha OB04G25990 I 0.750
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.750
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.750
OBART02G24860 Oryza barthii OBART02G24860 I 0.747
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.740
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.740
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.732
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.722
PK10136.1 Cannabis sativa PK10136.1 I 0.719
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.719
Pm019126 Prunus mume Pm019126 I 0.711
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.711
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.711
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.710
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.708
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.708
Cla022413 Citrullus lanatus Cla022413 I 0.701
Ca_17624 Cicer arietinum Ca_17624 I 0.701
MDP0000256621 Malus domestica MDP0000256621 I 0.701