MDP0000123466 (Malus domestica)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 MDP0000123466 T023585_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF2
M06714_2.00
Arabidopsis thaliana
NHTGTCKSHD

HDSMGACADN
Dap-seq
OMalley et al.(2016)
ARF2_col_v31
0.765 0.765
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000123466 B3 150 252

Links

Other B3 family TFs
Other Malus domestica TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa022314mg Prunus persica PRUPE_ppa022314mg I 0.908
Pm019941 Prunus mume Pm019941 I 0.898
PK04762.1 Cannabis sativa PK04762.1 I 0.847
VIT_07s0104g01230 Vitis vinifera VIT_07s0104g01230 I 0.837
TCM_004526 Theobroma cacao TCM_004526 I 0.786
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.786
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.776
ORGLA11G0129300 Oryza glaberrima ORGLA11G0129300 I 0.776
ORUFI11G16290 Oryza rufipogon ORUFI11G16290 I 0.776
OS11G0523800 Oryza sativa OS11G0523800 I 0.776
OPUNC11G12650 Oryza punctata OPUNC11G12650 I 0.776
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.776
POPTR_0014s12980 Populus trichocarpa POPTR_0014s12980 I 0.776
OMERI11G12590 Oryza meridionalis OMERI11G12590 I 0.776
LPERR12G09930 Leersia perrieri LPERR12G09930 I 0.776
LPERR11G11950 Leersia perrieri LPERR11G11950 I 0.776
GSMUA_Achr6G08090_001 Musa acuminata GSMUA_Achr6G08090_001 I 0.776
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.776
OB11G21910 Oryza brachyantha OB11G21910 I 0.776
OLONG_022378 Oryza longistaminata OLONG_022378 I 0.776
OGLUM11G14710 Oryza glumaepatula OGLUM11G14710 I 0.776
OBART11G15270 Oryza barthii OBART11G15270 I 0.776
ONIVA12G10760 Oryza nivara ONIVA12G10760 I 0.776
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.776
MDP0000310875 Malus domestica MDP0000310875 I 0.776
MDP0000258032 Malus domestica MDP0000258032 I 0.776
MDP0000138853 Malus domestica MDP0000138853 N 0.776
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.776
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.776
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.776
PK16974.1 Cannabis sativa PK16974.1 I 0.776
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.776
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.776
Cla019614 Citrullus lanatus Cla019614 I 0.776
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.776
Si021216m.g Setaria italica Si021216m.g I 0.776
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.776
mgf006511m Mimulus guttatus mgf006511m I 0.776
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.776
mgf015308m Mimulus guttatus mgf015308m I 0.776
Sb08g014320 Sorghum bicolor Sb08g014320 I 0.776
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.776
GLYMA19G39340 Glycine max GLYMA19G39340 N 0.776
ARF23 Oryza indica BGIOSGA033901 I 0.776
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.776
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.776
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.776
TCM_014743 Theobroma cacao TCM_014743 I 0.765
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.765
SapurV1A.0517s0240 Salix purpurea SapurV1A.0517s0240 I 0.765
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.765
Ca_05681 Cicer arietinum Ca_05681 I 0.765
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.765
VIT_01s0244g00150 Vitis vinifera VIT_01s0244g00150 I 0.765
ARF2 Arabidopsis thaliana AT5G62000 D 0.765
Bra010048 Brassica rapa Bra010048 I 0.765
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.765
Si000340m.g Setaria italica Si000340m.g I 0.765
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.765
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.765
MDP0000214352 Malus domestica MDP0000214352 N 0.765
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.765
Pm024588 Prunus mume Pm024588 I 0.765
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.765
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.765
Bo3g108130 Brassica oleracea Bo3g108130 I 0.765
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.765
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.765
Bo9g014770 Brassica oleracea Bo9g014770 I 0.765
mgf020855m Mimulus guttatus mgf020855m I 0.765
Bo2g161810 Brassica oleracea Bo2g161810 I 0.765
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.765
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.765
Bra035910 Brassica rapa Bra035910 I 0.765
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.765
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.765
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.765
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.765
MDP0000138860 Malus domestica MDP0000138860 N 0.765
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.765
GSMUA_AchrUn_randomG14770_001 Musa acuminata GSMUA_AchrUn_randomG14770_001 I 0.765
SapurV1A.0672s0210 Salix purpurea SapurV1A.0672s0210 I 0.765
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.765
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.765
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.765
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.765
SapurV1A.0774s0040 Salix purpurea SapurV1A.0774s0040 I 0.765
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.765
PGSC0003DMG400014179 Solanum tuberosum PGSC0003DMG400014179 I 0.765
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.765
OB12G20020 Oryza brachyantha OB12G20020 I 0.765
Eucgr.K02197 Eucalyptus grandis Eucgr.K02197 I 0.761
PDK_20s1394651g001 Phoenix dactylifera PDK_20s1394651g001 I 0.755
OPUNC01G41560 Oryza punctata OPUNC01G41560 I 0.755
Gorai.007G131900 Gossypium raimondii Gorai.007G131900 I 0.755
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.755
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.755
OGLUM01G46840 Oryza glumaepatula OGLUM01G46840 I 0.755
evm.TU.contig_31756 Carica papaya evm.TU.contig_31756 I 0.755
TCM_008374 Theobroma cacao TCM_008374 I 0.755
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.755
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.755
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.755
F775_31280 Aegilops tauschii F775_31280 I 0.755
GLYMA01G25270 Glycine max GLYMA01G25270 I 0.745
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.745
Ciclev10019257m.g Citrus clementina Ciclev10019257m.g I 0.745
OMERI01G39560 Oryza meridionalis OMERI01G39560 I 0.745
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.745
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.745
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.745
MLOC_68907 Hordeum vulgare MLOC_68907 I 0.745
OBART01G42570 Oryza barthii OBART01G42570 I 0.745
BGIOSGA005099 Oryza indica BGIOSGA005099 I 0.745
GLYMA03G36710 Glycine max GLYMA03G36710 N 0.745
BRADI2G59480 Brachypodium distachyon BRADI2G59480 I 0.745
TCM_016500 Theobroma cacao TCM_016500 I 0.745
F775_32662 Aegilops tauschii F775_32662 I 0.745
ORUFI01G45980 Oryza rufipogon ORUFI01G45980 I 0.745
BRADI4G07470 Brachypodium distachyon BRADI4G07470 I 0.745
orange1.1g005060m.g Citrus sinensis orange1.1g005060m.g I 0.745
TRAES3BF001100080CFD_g Triticum aestivum TRAES3BF001100080CFD_g I 0.745
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.745
PK12669.1 Cannabis sativa PK12669.1 I 0.745
ONIVA01G48620 Oryza nivara ONIVA01G48620 I 0.745
ARF4 Oryza sativa OS01G0927600 I 0.745
ORGLA01G0363100 Oryza glaberrima ORGLA01G0363100 I 0.745
Ciclev10019131m.g Citrus clementina Ciclev10019131m.g I 0.735
MTR_2g005240 Medicago truncatula MTR_2g005240 I 0.735
Bostr.7867s0204 Boechera stricta Bostr.7867s0204 I 0.735
Bo7g109250 Brassica oleracea Bo7g109250 I 0.735
MDP0000929655 Malus domestica MDP0000929655 I 0.735
orange1.1g005491m.g Citrus sinensis orange1.1g005491m.g I 0.735
TRIUR3_17755 Triticum urartu TRIUR3_17755 I 0.735
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.735
ARF9 Arabidopsis thaliana AT4G23980 I 0.735
XM_002320618.1 Populus trichocarpa POPTR_0020s00210 I 0.735
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.735
POPTR_0003s14200 Populus trichocarpa POPTR_0003s14200 I 0.735
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.735
Thhalv10024554m.g Eutrema salsugineum Thhalv10024554m.g I 0.735
GLYMA16G00220 Glycine max GLYMA16G00220 I 0.735
LjSGA_022281.1 Lotus japonicus LjSGA_022281.1 I 0.735
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.735
Bra019255 Brassica rapa Bra019255 I 0.735
30068.m002516 Ricinus communis 30068.m002516 I 0.735
Lus10023058.g Linum usitatissimum Lus10023058.g I 0.724
Lus10032413.g Linum usitatissimum Lus10032413.g I 0.724
Gorai.003G078000 Gossypium raimondii Gorai.003G078000 I 0.724
Bo1g037360 Brassica oleracea Bo1g037360 I 0.724
gene27792-v1.0-hybrid Fragaria vesca gene27792-v1.0-hybrid N 0.724
PK02218.1 Cannabis sativa PK02218.1 I 0.724
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.724
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.724
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.724
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.724
TCM_027113 Theobroma cacao TCM_027113 I 0.724
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.724
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.724
ARF9 Arabidopsis lyrata Al_scaffold_0007_1752 I 0.724
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.724
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.724
Ca_21948 Cicer arietinum Ca_21948 I 0.724
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.724
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.724
TCM_005126 Theobroma cacao TCM_005126 I 0.724
MTR_7g062540 Medicago truncatula MTR_7g062540 I 0.724
GSMUA_Achr9G08310_001 Musa acuminata GSMUA_Achr9G08310_001 I 0.724
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.724
GLYMA18G40180 Glycine max GLYMA18G40180 I 0.724
GLYMA03G41920 Glycine max GLYMA03G41920 I 0.724
PGSC0003DMG400000118 Solanum tuberosum PGSC0003DMG400000118 I 0.724
GLYMA07G16170 Glycine max GLYMA07G16170 I 0.724
AMTR_s00016p00168950 Amborella trichopoda AMTR_s00016p00168950 I 0.722
Pm018352 Prunus mume Pm018352 I 0.714
mgf005549m Mimulus guttatus mgf005549m I 0.714
cassava29828.valid.m1 Manihot esculenta cassava29828.valid.m1 I 0.714
PDK_20s1869091g001 Phoenix dactylifera PDK_20s1869091g001 I 0.714
MDP0000139073 Malus domestica MDP0000139073 I 0.714
GSMUA_AchrUn_randomG11300_001 Musa acuminata GSMUA_AchrUn_randomG11300_001 I 0.714
SapurV1A.1529s0070 Salix purpurea SapurV1A.1529s0070 I 0.714
PK07332.1 Cannabis sativa PK07332.1 I 0.714
PRUPE_ppa002230mg Prunus persica PRUPE_ppa002230mg I 0.714
Ca_23296 Cicer arietinum Ca_23296 I 0.714
MDP0000194603 Malus domestica MDP0000194603 I 0.714
Cla013021 Citrullus lanatus Cla013021 I 0.714
gene25123-v1.0-hybrid Fragaria vesca gene25123-v1.0-hybrid I 0.714
Eucgr.E00888 Eucalyptus grandis Eucgr.E00888 I 0.714
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.714
evm.TU.supercontig_96.40 Carica papaya evm.TU.supercontig_96.40 I 0.714
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.714
Gorai.001G153900 Gossypium raimondii Gorai.001G153900 I 0.714
Aquca_013_00067 Aquilegia coerulea Aquca_013_00067 I 0.714
Bra013748 Brassica rapa Bra013748 I 0.714
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.714
Aquca_003_00899 Aquilegia coerulea Aquca_003_00899 I 0.714
Gorai.007G044900 Gossypium raimondii Gorai.007G044900 I 0.711
Solyc01g096070.2 Solanum lycopersicum Solyc01g096070.2 I 0.707
GLYMA13G24240 Glycine max GLYMA13G24240 I 0.704
ARF11 Arabidopsis thaliana AT2G46530 I 0.704
cassava47299.m1 Manihot esculenta cassava47299.m1 I 0.704
cassava47298.m1 Manihot esculenta cassava47298.m1 I 0.704
Ciclev10014391m.g Citrus clementina Ciclev10014391m.g I 0.704
GLYMA07G32300 Glycine max GLYMA07G32300 I 0.704
GLYMA12G07560 Glycine max GLYMA12G07560 I 0.704
cassava6009.valid.m1 Manihot esculenta cassava6009.valid.m1 I 0.704
MTR_4g088210 Medicago truncatula MTR_4g088210 I 0.704
LjSGA_059669.1 Lotus japonicus LjSGA_059669.1 I 0.704
GSMUA_Achr7G24330_001 Musa acuminata GSMUA_Achr7G24330_001 I 0.704
Bostr.25993s0113 Boechera stricta Bostr.25993s0113 I 0.704
POPTR_0003s16210 Populus trichocarpa POPTR_0003s16210 I 0.704
cassava47301.m1 Manihot esculenta cassava47301.m1 I 0.704
AMTR_s00021p00200760 Amborella trichopoda AMTR_s00021p00200760 I 0.704
cassava47300.m1 Manihot esculenta cassava47300.m1 I 0.704
Pavir.Gb01617 Panicum virgatum Pavir.Gb01617 I 0.704
GRMZM2G378580 Zea mays GRMZM2G378580 I 0.704
gene19138-v1.0-hybrid Fragaria vesca gene19138-v1.0-hybrid I 0.704
MDP0000412781 Malus domestica MDP0000412781 I 0.704
cassava44132.valid.m1 Manihot esculenta cassava44132.valid.m1 I 0.704
cassava44131.valid.m1 Manihot esculenta cassava44131.valid.m1 I 0.704
Gorai.009G166100 Gossypium raimondii Gorai.009G166100 I 0.704
cassava43609.valid.m1 Manihot esculenta cassava43609.valid.m1 I 0.704
30128.m008545 Ricinus communis 30128.m008545 I 0.704
evm.TU.supercontig_9.161 Carica papaya evm.TU.supercontig_9.161 I 0.704
orange1.1g004106m.g Citrus sinensis orange1.1g004106m.g I 0.704
POPTR_0014s09560 Populus trichocarpa POPTR_0014s09560 I 0.704
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.704
cassava47297.m1 Manihot esculenta cassava47297.m1 I 0.704
cassava47296.m1 Manihot esculenta cassava47296.m1 I 0.704
Pavir.Ga01750 Panicum virgatum Pavir.Ga01750 I 0.704
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.704
Si009558m.g Setaria italica Si009558m.g I 0.704
Sb06g017490 Sorghum bicolor Sb06g017490 I 0.704
SapurV1A.0499s0060 Salix purpurea SapurV1A.0499s0060 I 0.704