orange1.1g001728m.g (Citrus sinensis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 orange1.1g001728m.g T023712_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF5
M06701_2.00 		Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW		 Dap-seq
OMalley et al.(2016)
MP_col 		0.856 0.856
ARF8
M01697_2.00 		Arabidopsis thaliana
NHTGTCGGN
NCCGACADN		 PBM
Weirauch et al.(2014)
pTH8661 		0.784 0.784
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g001728m B3 126 228
orange1.1g001787m B3 119 221
orange1.1g001821m B3 115 217
orange1.1g001931m B3 101 203
orange1.1g002116m B3 70 172
orange1.1g002119m B3 70 172

Links

Other B3 family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

494 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action