orange1.1g002390m.g (Citrus sinensis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 orange1.1g002390m.g T023714_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF8
M01697_2.00 		Arabidopsis thaliana
NHTGTCGGN
NCCGACADN		 PBM
Weirauch et al.(2014)
pTH8661 		0.887 0.887
ARF5
M06701_2.00 		Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW		 Dap-seq
OMalley et al.(2016)
MP_col 		0.784 0.784
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g002390m B3 158 260
orange1.1g002629m B3 128 230
orange1.1g002737m B3 116 218
orange1.1g003298m B3 128 230
orange1.1g003505m B3 45 147
orange1.1g003506m B3 45 147

Links

Other B3 family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

556 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action