orange1.1g003544m.g (Citrus sinensis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 orange1.1g003544m.g T023719_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF8
M01697_2.00 		Arabidopsis thaliana
NHTGTCGGN
NCCGACADN		 PBM
Weirauch et al.(2014)
pTH8661 		0.929 0.929
ARF5
M06701_2.00 		Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW		 Dap-seq
OMalley et al.(2016)
MP_col 		0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g003544m B3 127 229
orange1.1g003731m B3 115 217
orange1.1g003756m B3 127 229
orange1.1g003949m B3 127 223
orange1.1g004031m B3 94 196
orange1.1g004105m B3 127 229
orange1.1g004237m B3 127 229
orange1.1g004820m B3 44 146

Links

Other B3 family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

607 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action