orange1.1g005482m.g (Citrus sinensis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 orange1.1g005482m.g T023727_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.969 0.969
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g005482m B3 127 229

Links

Other B3 family TFs
Other Citrus sinensis TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 1.000
TCM_043157 Theobroma cacao TCM_043157 I 0.979
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.979
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.979
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.979
Bra011162 Brassica rapa Bra011162 I 0.979
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.969
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.969
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.969
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.969
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.969
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.969
mgf024607m Mimulus guttatus mgf024607m I 0.969
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.969
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.969
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.969
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.969
Bo1g014600 Brassica oleracea Bo1g014600 I 0.969
ARF16 Arabidopsis thaliana AT4G30080 D 0.969
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.959
Cla018574 Citrullus lanatus Cla018574 I 0.959
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.959
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.959
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.959
MDP0000131481 Malus domestica MDP0000131481 I 0.959
Bo7g114200 Brassica oleracea Bo7g114200 I 0.959
Pm018533 Prunus mume Pm018533 I 0.959
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.959
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.959
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.959
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.959
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.959
MDP0000221322 Malus domestica MDP0000221322 I 0.959
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.959
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.959
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.959
Pm030120 Prunus mume Pm030120 I 0.959
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.959
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.959
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.959
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.948
PK17007.1 Cannabis sativa PK17007.1 I 0.948
Ca_02541 Cicer arietinum Ca_02541 I 0.948
30078.m002329 Ricinus communis 30078.m002329 I 0.948
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.948
Pm031275 Prunus mume Pm031275 I 0.948
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.948
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.948
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.948
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.948
Bra024109 Brassica rapa Bra024109 I 0.948
TCM_022163 Theobroma cacao TCM_022163 I 0.948
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.948
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.948
Cla013979 Citrullus lanatus Cla013979 I 0.948
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.948
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.948
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.948
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.938
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.938
Ca_26121 Cicer arietinum Ca_26121 I 0.938
mgf005300m Mimulus guttatus mgf005300m I 0.938
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.938
ARF18 Oryza sativa OS06G0685700 I 0.938
Si005991m.g Setaria italica Si005991m.g I 0.938
MDP0000750392 Malus domestica MDP0000750392 I 0.938
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.938
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.938
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.938
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.938
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.938
27538.m000327 Ricinus communis 27538.m000327 I 0.938
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.938
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.938
OBART06G25230 Oryza barthii OBART06G25230 I 0.938
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.938
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.938
OB06G32920 Oryza brachyantha OB06G32920 I 0.938
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.938
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.938
TCM_042067 Theobroma cacao TCM_042067 I 0.938
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.938
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.938
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.938
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.938
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.938
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.938
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.938
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.928
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.928
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.928
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.928
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.928
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.928
Si034525m.g Setaria italica Si034525m.g I 0.928
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.928
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.928
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.928
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.928
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.928
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.918
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.918
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.918
F775_32978 Aegilops tauschii F775_32978 I 0.918
Ca_17136 Cicer arietinum Ca_17136 I 0.918
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.918
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.918
27494.m000045 Ricinus communis 27494.m000045 I 0.918
OB10G20590 Oryza brachyantha OB10G20590 I 0.918
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.918
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.918
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.907
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.907
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.907
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.907
OBART10G13410 Oryza barthii OBART10G13410 I 0.907
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.907
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.907
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.907
ARF10 Arabidopsis thaliana AT2G28350 I 0.907
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.907
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.907
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.907
ARF22 Oryza sativa OS10G0479900 I 0.907
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.907
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.906
mgf016139m Mimulus guttatus mgf016139m I 0.906
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.905
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.897
Bra011955 Brassica rapa Bra011955 I 0.897
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.897
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.897
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.897
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.897
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.897
PK13064.1 Cannabis sativa PK13064.1 I 0.897
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.897
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.887
Bo4g071620 Brassica oleracea Bo4g071620 I 0.887
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.885
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.885
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.885
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.876
Cla008883 Citrullus lanatus Cla008883 I 0.876
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.876
Si016509m.g Setaria italica Si016509m.g I 0.876
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.876
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.876
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.876
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.876
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.876
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.875
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.866
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.866
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.866
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.866
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.866
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.866
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.866
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.866
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.866
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.866
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.866
ARF8 Oryza sativa OS02G0628600 I 0.866
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.866
mgf000336m Mimulus guttatus mgf000336m I 0.866
OB02G32150 Oryza brachyantha OB02G32150 I 0.865
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.856
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.856
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.856
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.856
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.856
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.845
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.845
Ca_08488 Cicer arietinum Ca_08488 I 0.835
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.835
PK13393.1 Cannabis sativa PK13393.1 I 0.835
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.833
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.833
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.826
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.819
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.814
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.814
ARF10 Oryza indica BGIOSGA016767 I 0.804
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.804
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.804
OS04G0519700 Oryza sativa OS04G0519700 I 0.804
OBART04G18910 Oryza barthii OBART04G18910 I 0.804
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.804
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.804
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.804
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.794
Si009541m.g Setaria italica Si009541m.g I 0.784
OB04G25990 Oryza brachyantha OB04G25990 I 0.784
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.776
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.773
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.772
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.763
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.763
Ca_17624 Cicer arietinum Ca_17624 I 0.753
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.753
TCM_035002 Theobroma cacao TCM_035002 I 0.742
Cla022413 Citrullus lanatus Cla022413 I 0.742
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.740
OBART02G24860 Oryza barthii OBART02G24860 I 0.733
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.732
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.732
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.732
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.722
Pm019126 Prunus mume Pm019126 I 0.722
PK10136.1 Cannabis sativa PK10136.1 I 0.722
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.722
TCM_029792 Theobroma cacao TCM_029792 I 0.717
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.714
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.711
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.711
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.711
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.711
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.711
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.711
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.711
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.711
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.711
29908.m005953 Ricinus communis 29908.m005953 I 0.711
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.711
MDP0000256621 Malus domestica MDP0000256621 I 0.701
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.701