CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g005491m.g
(
Citrus sinensis
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
orange1.1g005491m.g
T023728_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF2
M06714_2.00
Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN
Dap-seq
OMalley et al.(2016)
ARF2_col_v31
0.802
0.802
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g005491m
B3
123
223
FSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRC
orange1.1g005575m
B3
123
223
FSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRC
orange1.1g005675m
B3
123
223
FSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRC
orange1.1g006471m
B3
76
176
FSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRC
orange1.1g007282m
B3
42
142
FSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRC
orange1.1g009328m
B3
1
70
MNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRC
Links
Other
B3
family TFs
Other
Citrus sinensis
TFs
333 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ZNF140
Homo sapiens
ENSG00000196387
D
0.000
ENSAMEG00000013369
Ailuropoda melanoleuca
ENSAMEG00000013369
I
0.000
ZNF140
Otolemur garnettii
ENSOGAG00000030665
I
0.000
ENSPANG00000001812
Papio anubis
ENSPANG00000001812
I
0.000
ZNF140
Procavia capensis
ENSPCAG00000014332
I
0.000
ENSPPYG00000005153
Pongo abelii
ENSPPYG00000005153
I
0.000
ZNF140
Pan troglodytes
ENSPTRG00000023960
I
0.000
ZNF140
Pteropus vampyrus
ENSPVAG00000014537
I
0.000
ZNF140
Sorex araneus
ENSSARG00000000083
I
0.000
ENSSTOG00000014531
Ictidomys tridecemlineatus
ENSSTOG00000014531
I
0.000
ZNF140
Tursiops truncatus
ENSTTRG00000004364
I
0.000
ZNF140
Vicugna pacos
ENSVPAG00000011394
I
0.000
ENSP00000347755
Macaca fascicularis
ENSP00000347755
I
0.000
ENSOARG00000008528
Ovis aries
ENSOARG00000008528
I
0.000
ENSNLEG00000012479
Nomascus leucogenys
ENSNLEG00000012479
I
0.000
ZNF140
Bos taurus
ENSBTAG00000040072
I
0.000
ZNF140
Canis familiaris
ENSCAFG00000030275
I
0.000
ZNF140
Callithrix jacchus
ENSCJAG00000013104
I
0.000
ENSCSAG00000001815
Chlorocebus sabaeus
ENSCSAG00000001815
I
0.000
ZNF140
Dasypus novemcinctus
ENSDNOG00000019632
I
0.000
ZNF140
Equus caballus
ENSECAG00000007427
I
0.000
ZNF140
Felis catus
ENSFCAG00000024075
I
0.000
ZNF140
Gorilla gorilla
ENSGGOG00000026442
I
0.000
ZNF140
Myotis lucifugus
ENSMLUG00000009202
I
0.000
ZNF140
Macaca mulatta
ENSMMUG00000003150
I
0.000
ENSMPUG00000002714
Mustela putorius furo
ENSMPUG00000002714
I
0.000
Myotis_brandtii_ZNF140_10005227
Myotis brandtii
Myotis_brandtii_ZNF140_10005227
I
0.000