Pavir.Cb02052 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Cb02052 T023814_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Cb02052.1.p B3 37 150

Links

Other B3 family TFs
Other Panicum virgatum TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.980
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.941
OB12G13420 Oryza brachyantha OB12G13420 N 0.931
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.921
OBART11G03590 Oryza barthii OBART11G03590 N 0.911
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.911
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.911
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.911
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.911
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.911
OS11G0156000 Oryza sativa OS11G0156000 N 0.911
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.911
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.911
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.911
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.911
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.909
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.901
F775_02500 Aegilops tauschii F775_02500 N 0.901
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.901
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.901
OB11G12920 Oryza brachyantha OB11G12920 N 0.901
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.901
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.899
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.886
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.881
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.881
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.879
Si027632m.g Setaria italica Si027632m.g N 0.871
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.869
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.861
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.861
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.861
Si010849m.g Setaria italica Si010849m.g N 0.861
F775_31255 Aegilops tauschii F775_31255 N 0.860
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.851
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.838
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.832
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.832
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.832
30032.m000462 Ricinus communis 30032.m000462 N 0.832
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.832
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.832
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.832
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.832
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.832
Bo01079s020 Brassica oleracea Bo01079s020 N 0.832
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.832
ARF31 Arabidopsis thaliana AT2G36080 N 0.832
Bra017262 Brassica rapa Bra017262 N 0.832
Bra005301 Brassica rapa Bra005301 N 0.822
PK04952.1 Cannabis sativa PK04952.1 I 0.822
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.822
OBART12G03490 Oryza barthii OBART12G03490 N 0.822
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.822
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.822
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.822
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.822
Bo4g035110 Brassica oleracea Bo4g035110 N 0.822
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.822
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.822
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.822
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.822
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.818
TCM_022729 Theobroma cacao TCM_022729 N 0.818
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.818
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.812
Cla017937 Citrullus lanatus Cla017937 I 0.812
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.812
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.812
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.812
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.812
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.802
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.802
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.802
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.802
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.802
MDP0000229742 Malus domestica MDP0000229742 N 0.802
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.800
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.792
mgf019085m Mimulus guttatus mgf019085m N 0.792
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.792
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.792
Ca_25633 Cicer arietinum Ca_25633 I 0.792
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.786
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.782
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.782
LPERR11G03050 Leersia perrieri LPERR11G03050 N 0.782
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.772
Ca_00826 Cicer arietinum Ca_00826 N 0.772
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.772
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.772
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.772
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.772
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.772
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.772
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.770
Traes_2AL_25382F498 Triticum aestivum Traes_2AL_25382F498 N 0.768
mgf018965m Mimulus guttatus mgf018965m N 0.768
Bo5g136360 Brassica oleracea Bo5g136360 N 0.762
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.762
Bra034828 Brassica rapa Bra034828 N 0.762
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.762
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.762
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.762
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.762
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.762
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.762
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.762
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.762
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.762
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.755
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.752
Bo9g176470 Brassica oleracea Bo9g176470 N 0.752
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.752
Bo3g003800 Brassica oleracea Bo3g003800 N 0.752
Bo3g064320 Brassica oleracea Bo3g064320 N 0.752
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.752
Bra005886 Brassica rapa Bra005886 N 0.752
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.752
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.752
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.752
Bra001411 Brassica rapa Bra001411 N 0.752
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.747
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.743
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.743
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.743
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.743
OBART03G01650 Oryza barthii OBART03G01650 N 0.743
OB03G11610 Oryza brachyantha OB03G11610 N 0.743
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.743
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.743
Si036864m.g Setaria italica Si036864m.g N 0.743
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.743
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.743
Si011823m.g Setaria italica Si011823m.g N 0.743
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.743
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.743
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.743
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.743
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.743
Pm024248 Prunus mume Pm024248 I 0.743
OS03G0120900 Oryza sativa OS03G0120900 N 0.743
Pm028725 Prunus mume Pm028725 N 0.743
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.743
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.743
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.743
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.743
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.743
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.743
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.743
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.743
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.742
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.741
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.733
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.733
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.733
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.733
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.733
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.733
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.733
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.733
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.733
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.733
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.733
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.733
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.733
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.733
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.733
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.733
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.733
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.733
OB02G35380 Oryza brachyantha OB02G35380 I 0.733
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.733
TCM_005014 Theobroma cacao TCM_005014 I 0.733
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.733
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.733
TCM_015590 Theobroma cacao TCM_015590 I 0.733
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.724
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.723
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.723
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.723
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.723
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.723
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.723
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.723
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.723
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.723
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.723
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.723
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.723
OBART04G22880 Oryza barthii OBART04G22880 I 0.723
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.723
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.723
OBART10G17010 Oryza barthii OBART10G17010 N 0.723
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.723
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.723
Bra041023 Brassica rapa Bra041023 N 0.723
OS10G0537100 Oryza sativa OS10G0537100 N 0.723
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.723
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.723
PK11025.1 Cannabis sativa PK11025.1 I 0.723
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.723
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.723
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.723
OS04G0581400 Oryza sativa OS04G0581400 I 0.723
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.723
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.723
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.723
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.723
Bra040478 Brassica rapa Bra040478 I 0.720
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.716
Cla005055 Citrullus lanatus Cla005055 N 0.714
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.713
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.713
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.713
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.713
Bra003482 Brassica rapa Bra003482 N 0.713
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.713
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.713
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.713
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.713
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.713
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.713
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.713
OBART02G28100 Oryza barthii OBART02G28100 N 0.713
30076.m004471 Ricinus communis 30076.m004471 I 0.713
30068.m002615 Ricinus communis 30068.m002615 I 0.713
OS02G0683500 Oryza sativa OS02G0683500 N 0.713
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.713
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.713
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.713
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.713
mgf023769m Mimulus guttatus mgf023769m N 0.713
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.713
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.713
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.713
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.713
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.713
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.713
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.713
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.713
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.710
Cla014858 Citrullus lanatus Cla014858 N 0.707
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.707
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.704
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.703
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.703
Bo3g039420 Brassica oleracea Bo3g039420 N 0.703
Cla006845 Citrullus lanatus Cla006845 I 0.703
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.703
PK21157.1 Cannabis sativa PK21157.1 I 0.703
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.703
Si039972m.g Setaria italica Si039972m.g N 0.703
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.703
Bra004501 Brassica rapa Bra004501 N 0.703
Si020241m.g Setaria italica Si020241m.g N 0.703
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.703
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.703
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.703
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.703
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.703
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.703
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.703
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.703
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.703
MDP0000138163 Malus domestica MDP0000138163 N 0.703
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.701
OB01G36520 Oryza brachyantha OB01G36520 I 0.701
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.700
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.700