Pavir.Da00107 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Da00107 T023816_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.928 0.928
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00107.1.p B3 122 224
Pavir.Da00107.2.p B3 122 224

Links

Other B3 family TFs
Other Panicum virgatum TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.990
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.990
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.990
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.990
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.990
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.990
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.990
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.990
ARF18 Oryza sativa OS06G0685700 I 0.990
Si005991m.g Setaria italica Si005991m.g I 0.990
OB06G32920 Oryza brachyantha OB06G32920 I 0.990
OBART06G25230 Oryza barthii OBART06G25230 I 0.990
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.990
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.979
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.959
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.948
MDP0000131481 Malus domestica MDP0000131481 I 0.948
MDP0000221322 Malus domestica MDP0000221322 I 0.948
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.948
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.948
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.938
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.938
OBART10G13410 Oryza barthii OBART10G13410 I 0.938
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.938
ARF22 Oryza sativa OS10G0479900 I 0.938
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.938
Pm031275 Prunus mume Pm031275 I 0.938
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.938
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.938
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.938
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.938
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.938
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.938
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.938
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.938
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.938
Si034525m.g Setaria italica Si034525m.g I 0.938
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.938
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.938
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.938
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.928
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.928
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.928
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.928
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.928
ARF16 Arabidopsis thaliana AT4G30080 D 0.928
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.928
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.928
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.928
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.928
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.928
mgf005300m Mimulus guttatus mgf005300m I 0.928
27538.m000327 Ricinus communis 27538.m000327 I 0.928
Cla018574 Citrullus lanatus Cla018574 I 0.928
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.928
Pm030120 Prunus mume Pm030120 I 0.928
TCM_043157 Theobroma cacao TCM_043157 I 0.928
TCM_042067 Theobroma cacao TCM_042067 I 0.928
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.928
Bra011162 Brassica rapa Bra011162 I 0.928
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.928
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.928
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.928
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.928
F775_32978 Aegilops tauschii F775_32978 I 0.928
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.928
OB10G20590 Oryza brachyantha OB10G20590 I 0.928
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.928
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.928
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.928
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.928
30078.m002329 Ricinus communis 30078.m002329 I 0.918
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.918
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.918
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.918
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.918
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.918
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.918
TCM_022163 Theobroma cacao TCM_022163 I 0.918
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.918
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.918
PK17007.1 Cannabis sativa PK17007.1 I 0.918
mgf024607m Mimulus guttatus mgf024607m I 0.918
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.918
Bo1g014600 Brassica oleracea Bo1g014600 I 0.918
Bo7g114200 Brassica oleracea Bo7g114200 I 0.918
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.907
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.907
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.907
Ca_02541 Cicer arietinum Ca_02541 I 0.907
Bra024109 Brassica rapa Bra024109 I 0.907
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.907
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.907
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.907
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.907
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.907
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.907
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.897
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.897
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.897
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.897
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.897
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.897
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.897
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.897
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.897
mgf016139m Mimulus guttatus mgf016139m I 0.897
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.897
MDP0000750392 Malus domestica MDP0000750392 I 0.897
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.897
Pm018533 Prunus mume Pm018533 I 0.897
mgf000336m Mimulus guttatus mgf000336m I 0.897
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.897
Ca_26121 Cicer arietinum Ca_26121 I 0.897
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.897
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.896
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.887
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.887
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.887
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.887
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.887
Ca_17136 Cicer arietinum Ca_17136 I 0.887
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.887
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.887
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.887
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.887
ARF8 Oryza sativa OS02G0628600 I 0.887
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.887
ARF10 Arabidopsis thaliana AT2G28350 I 0.887
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.887
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.887
PK13064.1 Cannabis sativa PK13064.1 I 0.887
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.887
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.887
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.887
Si016509m.g Setaria italica Si016509m.g I 0.887
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.887
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.887
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.887
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.885
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.876
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.876
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.876
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.876
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.876
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.876
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.876
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.876
Cla008883 Citrullus lanatus Cla008883 I 0.876
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.876
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.876
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.876
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.876
Bra011955 Brassica rapa Bra011955 I 0.876
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.876
Cla013979 Citrullus lanatus Cla013979 I 0.876
OB02G32150 Oryza brachyantha OB02G32150 I 0.876
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.866
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.866
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.866
Bo4g071620 Brassica oleracea Bo4g071620 I 0.866
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.866
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.866
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.866
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.856
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.856
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.856
27494.m000045 Ricinus communis 27494.m000045 I 0.856
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.845
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.845
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.845
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.835
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.825
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.825
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.825
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.819
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.814
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.814
OBART04G18910 Oryza barthii OBART04G18910 I 0.814
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.814
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.814
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.814
OS04G0519700 Oryza sativa OS04G0519700 I 0.814
ARF10 Oryza indica BGIOSGA016767 I 0.814
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.812
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.812
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.804
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.804
Si009541m.g Setaria italica Si009541m.g I 0.784
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.784
PK13393.1 Cannabis sativa PK13393.1 I 0.784
Ca_08488 Cicer arietinum Ca_08488 I 0.773
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.763
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.763
Pm019126 Prunus mume Pm019126 I 0.753
TCM_035002 Theobroma cacao TCM_035002 I 0.753
OB04G25990 Oryza brachyantha OB04G25990 I 0.753
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.753
OBART02G24860 Oryza barthii OBART02G24860 I 0.747
MDP0000256621 Malus domestica MDP0000256621 I 0.742
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.742
Cla022413 Citrullus lanatus Cla022413 I 0.742
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.742
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.742
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.742
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.742
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.742
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.742
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.732
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.732
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.732
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.732
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.732
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.732
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.732
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.732
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.722
PK10136.1 Cannabis sativa PK10136.1 I 0.722
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.722
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.722
29908.m005953 Ricinus communis 29908.m005953 I 0.722
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.722
Ca_17624 Cicer arietinum Ca_17624 I 0.722
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.722
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.711
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.711
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.711
OB09G15010 Oryza brachyantha OB09G15010 N 0.711
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.711
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.711
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.711
Lus10024754.g Linum usitatissimum Lus10024754.g N 0.701
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N 0.701