Pavir.Eb00045 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Eb00045 T023839_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF2
M06714_2.00 		Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN		 Dap-seq
OMalley et al.(2016)
ARF2_col_v31 		0.701 0.701
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb00045.1.p B3 116 218
Pavir.Eb00045.2.p B3 116 218

Links

Other B3 family TFs
Other Panicum virgatum TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ea00026 Panicum virgatum Pavir.Ea00026 I 0.990
Sb03g000530 Sorghum bicolor Sb03g000530 I 0.990
OLONG_005875 Oryza longistaminata OLONG_005875 I 0.969
OGLUM01G09880 Oryza glumaepatula OGLUM01G09880 I 0.969
OBART01G08640 Oryza barthii OBART01G08640 I 0.969
OMERI01G08660 Oryza meridionalis OMERI01G08660 I 0.969
OPUNC01G08500 Oryza punctata OPUNC01G08500 I 0.969
ARF1 Oryza sativa OS01G0236300 I 0.969
ORUFI01G09450 Oryza rufipogon ORUFI01G09450 I 0.969
BGIOSGA003093 Oryza indica BGIOSGA003093 I 0.969
ORGLA01G0077700 Oryza glaberrima ORGLA01G0077700 I 0.969
LPERR01G07680 Leersia perrieri LPERR01G07680 I 0.959
ONIVA01G11220 Oryza nivara ONIVA01G11220 N 0.958
TRAES3BF007300580CFD_g Triticum aestivum TRAES3BF007300580CFD_g I 0.948
TRIUR3_28704 Triticum urartu TRIUR3_28704 I 0.948
OB01G18840 Oryza brachyantha OB01G18840 N 0.948
F775_21871 Aegilops tauschii F775_21871 I 0.948
MLOC_65945 Hordeum vulgare MLOC_65945 I 0.948
GRMZM2G475263 Zea mays GRMZM2G475263 N 0.938
Si000540m.g Setaria italica Si000540m.g N 0.938
BRADI2G08120 Brachypodium distachyon BRADI2G08120 N 0.887
Ciclev10019174m.g Citrus clementina Ciclev10019174m.g I 0.825
orange1.1g005368m.g Citrus sinensis orange1.1g005368m.g I 0.825
Gorai.007G109500 Gossypium raimondii Gorai.007G109500 I 0.804
Solyc08g082630.2 Solanum lycopersicum Solyc08g082630.2 I 0.794
Cucsa.303990 Cucumis sativus Cucsa.303990 I 0.773
Aquca_013_00067 Aquilegia coerulea Aquca_013_00067 I 0.773
BGIOSGA016467 Oryza indica BGIOSGA016467 I 0.763
ONIVA04G11850 Oryza nivara ONIVA04G11850 I 0.763
evm.TU.supercontig_96.40 Carica papaya evm.TU.supercontig_96.40 I 0.763
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.763
ORGLA04G0107000 Oryza glaberrima ORGLA04G0107000 I 0.763
cassava29828.valid.m1 Manihot esculenta cassava29828.valid.m1 I 0.763
OMERI04G12260 Oryza meridionalis OMERI04G12260 I 0.763
OGLUM04G13380 Oryza glumaepatula OGLUM04G13380 I 0.763
Bostr.25993s0113 Boechera stricta Bostr.25993s0113 I 0.763
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.763
PK07332.1 Cannabis sativa PK07332.1 I 0.763
Cagra.0050s0046 Capsella grandiflora Cagra.0050s0046 I 0.763
Carubv10022841m.g Capsella rubella Carubv10022841m.g I 0.763
ORUFI04G14900 Oryza rufipogon ORUFI04G14900 I 0.763
chr1.LjT43L07.10.nd Lotus japonicus chr1.LjT43L07.10.nd I 0.763
Gorai.007G044900 Gossypium raimondii Gorai.007G044900 I 0.763
GLYMA07G06060 Glycine max GLYMA07G06060 I 0.763
Cla011540 Citrullus lanatus Cla011540 I 0.763
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.763
ARF11 Arabidopsis thaliana AT2G46530 I 0.763
MDP0000194603 Malus domestica MDP0000194603 I 0.763
GLYMA03G41920 Glycine max GLYMA03G41920 I 0.763
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.763
ARF9 Oryza sativa OS04G0442000 I 0.763
GLYMA16G02650 Glycine max GLYMA16G02650 I 0.763
mgf005549m Mimulus guttatus mgf005549m I 0.755
Bo8g097320 Brassica oleracea Bo8g097320 I 0.753
TCM_005126 Theobroma cacao TCM_005126 I 0.753
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.753
PRUPE_ppa002230mg Prunus persica PRUPE_ppa002230mg I 0.753
ARF18 Arabidopsis thaliana AT3G61830 I 0.753
AMTR_s00016p00168950 Amborella trichopoda AMTR_s00016p00168950 I 0.753
30068.m002516 Ricinus communis 30068.m002516 I 0.753
Pm018352 Prunus mume Pm018352 I 0.753
PGSC0003DMG400000118 Solanum tuberosum PGSC0003DMG400000118 I 0.753
Bo3g039330 Brassica oleracea Bo3g039330 I 0.753
cassava43609.valid.m1 Manihot esculenta cassava43609.valid.m1 I 0.753
Bo01141s010 Brassica oleracea Bo01141s010 I 0.753
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.753
OB04G20880 Oryza brachyantha OB04G20880 I 0.753
GSMUA_Achr6G12780_001 Musa acuminata GSMUA_Achr6G12780_001 I 0.753
Lus10023058.g Linum usitatissimum Lus10023058.g I 0.753
GSMUA_AchrUn_randomG11300_001 Musa acuminata GSMUA_AchrUn_randomG11300_001 I 0.753
Thhalv10001365m.g Eutrema salsugineum Thhalv10001365m.g I 0.753
evm.TU.supercontig_15.1 Carica papaya evm.TU.supercontig_15.1 I 0.753
Lus10032413.g Linum usitatissimum Lus10032413.g I 0.753
Gorai.001G153900 Gossypium raimondii Gorai.001G153900 I 0.753
GSMUA_Achr10G15100_001 Musa acuminata GSMUA_Achr10G15100_001 I 0.753
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.753
ARF18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002633 I 0.753
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.753
Bra014419 Brassica rapa Bra014419 I 0.753
ARF11 Arabidopsis lyrata scaffold_403621.1 I 0.745
Thhalv10005857m.g Eutrema salsugineum Thhalv10005857m.g I 0.742
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.742
POPTR_0001s13110 Populus trichocarpa POPTR_0001s13110 I 0.742
MDP0000139073 Malus domestica MDP0000139073 I 0.742
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.742
Si009558m.g Setaria italica Si009558m.g I 0.742
Pm024149 Prunus mume Pm024149 I 0.742
BRADI5G10950 Brachypodium distachyon BRADI5G10950 I 0.742
POPTR_0002s17350 Populus trichocarpa POPTR_0002s17350 I 0.742
Pavir.Ga01750 Panicum virgatum Pavir.Ga01750 I 0.742
PDK_20s1869091g001 Phoenix dactylifera PDK_20s1869091g001 I 0.742
Traes_2BL_1AED96909 Triticum aestivum Traes_2BL_1AED96909 I 0.742
Sb06g017490 Sorghum bicolor Sb06g017490 I 0.742
PRUPE_ppa002617mg Prunus persica PRUPE_ppa002617mg I 0.742
POPTR_0003s14200 Populus trichocarpa POPTR_0003s14200 I 0.742
Pavir.Gb01617 Panicum virgatum Pavir.Gb01617 I 0.742
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.742
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.742
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.742
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.742
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.742
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.742
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.742
Bra004530 Brassica rapa Bra004530 I 0.742
Bo4g008150 Brassica oleracea Bo4g008150 I 0.742
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.742
30128.m008545 Ricinus communis 30128.m008545 I 0.742
Gorai.003G078000 Gossypium raimondii Gorai.003G078000 I 0.742
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.742
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.742
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.742
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.742
PK02218.1 Cannabis sativa PK02218.1 I 0.742
Solyc01g096070.2 Solanum lycopersicum Solyc01g096070.2 I 0.737
Carubv10018954m.g Capsella rubella Carubv10018954m.g I 0.735
Bostr.13158s0186 Boechera stricta Bostr.13158s0186 I 0.735
gene19138-v1.0-hybrid Fragaria vesca gene19138-v1.0-hybrid I 0.735
Cagra.0483s0062 Capsella grandiflora Cagra.0483s0062 I 0.735
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.732
SapurV1A.0499s0060 Salix purpurea SapurV1A.0499s0060 I 0.732
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.732
Cla013021 Citrullus lanatus Cla013021 I 0.732
gene25123-v1.0-hybrid Fragaria vesca gene25123-v1.0-hybrid I 0.732
Ca_21948 Cicer arietinum Ca_21948 I 0.732
TCM_016500 Theobroma cacao TCM_016500 I 0.732
SapurV1A.1529s0070 Salix purpurea SapurV1A.1529s0070 I 0.732
TCM_008374 Theobroma cacao TCM_008374 I 0.732
POPTR_0003s16210 Populus trichocarpa POPTR_0003s16210 I 0.732
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.732
GRMZM2G137413 Zea mays GRMZM2G137413 I 0.732
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.732
PGSC0003DMG400012261 Solanum tuberosum PGSC0003DMG400012261 I 0.732
GLYMA01G25270 Glycine max GLYMA01G25270 I 0.732
GRMZM2G017187 Zea mays GRMZM2G017187 I 0.732
Si016562m.g Setaria italica Si016562m.g I 0.732
Aquca_003_00899 Aquilegia coerulea Aquca_003_00899 I 0.722
OB02G28170 Oryza brachyantha OB02G28170 I 0.722
MTR_2g005240 Medicago truncatula MTR_2g005240 I 0.722
Ciclev10019257m.g Citrus clementina Ciclev10019257m.g I 0.722
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.722
cassava47301.m1 Manihot esculenta cassava47301.m1 I 0.722
cassava47300.m1 Manihot esculenta cassava47300.m1 I 0.722
OLONG_013033 Oryza longistaminata OLONG_013033 I 0.722
cassava44132.valid.m1 Manihot esculenta cassava44132.valid.m1 I 0.722
cassava47296.m1 Manihot esculenta cassava47296.m1 I 0.722
cassava47297.m1 Manihot esculenta cassava47297.m1 I 0.722
cassava47299.m1 Manihot esculenta cassava47299.m1 I 0.722
cassava47298.m1 Manihot esculenta cassava47298.m1 I 0.722
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.722
GSMUA_Achr10G16170_001 Musa acuminata GSMUA_Achr10G16170_001 I 0.722
orange1.1g005060m.g Citrus sinensis orange1.1g005060m.g I 0.722
MDP0000929655 Malus domestica MDP0000929655 I 0.722
Pavir.Ab01961 Panicum virgatum Pavir.Ab01961 I 0.722
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.722
SapurV1A.0013s0230 Salix purpurea SapurV1A.0013s0230 I 0.722
PK12669.1 Cannabis sativa PK12669.1 I 0.722
GLYMA07G16170 Glycine max GLYMA07G16170 I 0.722
GLYMA16G00220 Glycine max GLYMA16G00220 I 0.722
GRMZM2G378580 Zea mays GRMZM2G378580 I 0.722
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.722
PDK_20s1394651g001 Phoenix dactylifera PDK_20s1394651g001 I 0.722
cassava44131.valid.m1 Manihot esculenta cassava44131.valid.m1 I 0.722
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.722
LjSGA_022281.1 Lotus japonicus LjSGA_022281.1 I 0.722
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.722
GSMUA_Achr6G29070_001 Musa acuminata GSMUA_Achr6G29070_001 I 0.722
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.722
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.722
VIT_01s0244g00150 Vitis vinifera VIT_01s0244g00150 I 0.722
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.722
POPTR_0014s09560 Populus trichocarpa POPTR_0014s09560 I 0.722
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.722
GSMUA_Achr7G24330_001 Musa acuminata GSMUA_Achr7G24330_001 I 0.714
MDP0000258032 Malus domestica MDP0000258032 I 0.711
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.711
MDP0000310875 Malus domestica MDP0000310875 I 0.711
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.711
Eucgr.E00888 Eucalyptus grandis Eucgr.E00888 I 0.711
Ca_23296 Cicer arietinum Ca_23296 I 0.711
GLYMA18G40180 Glycine max GLYMA18G40180 I 0.711
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.711
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.711
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.711
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.711
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.711
orange1.1g005491m.g Citrus sinensis orange1.1g005491m.g I 0.711
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.711
Bo3g108130 Brassica oleracea Bo3g108130 I 0.711
Bra010048 Brassica rapa Bra010048 I 0.711
PK16974.1 Cannabis sativa PK16974.1 I 0.711
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.711
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.711
Si000340m.g Setaria italica Si000340m.g I 0.711
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.711
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.711
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.711
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.711
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.711
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.711
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.711
F775_31280 Aegilops tauschii F775_31280 I 0.711
TCM_027113 Theobroma cacao TCM_027113 I 0.711
Cla019614 Citrullus lanatus Cla019614 I 0.711
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.711
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.711
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.711
mgf015308m Mimulus guttatus mgf015308m I 0.711
mgf006511m Mimulus guttatus mgf006511m I 0.711
GSMUA_Achr9G08310_001 Musa acuminata GSMUA_Achr9G08310_001 I 0.711
OB01G35190 Oryza brachyantha OB01G35190 I 0.711
Ciclev10019131m.g Citrus clementina Ciclev10019131m.g I 0.711
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.711
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.711
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.711
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.711
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.704
TCM_014743 Theobroma cacao TCM_014743 I 0.704
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.704
PGSC0003DMG400014179 Solanum tuberosum PGSC0003DMG400014179 I 0.704
SapurV1A.0517s0240 Salix purpurea SapurV1A.0517s0240 I 0.701
BRADI2G59480 Brachypodium distachyon BRADI2G59480 I 0.701
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.701
OPUNC11G12650 Oryza punctata OPUNC11G12650 I 0.701
SapurV1A.0672s0210 Salix purpurea SapurV1A.0672s0210 I 0.701
cassava32762.m1 Manihot esculenta cassava32762.m1 I 0.701
Bra013748 Brassica rapa Bra013748 I 0.701
ARF23 Oryza indica BGIOSGA033901 I 0.701
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.701
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.701
OGLUM11G14710 Oryza glumaepatula OGLUM11G14710 I 0.701
ONIVA12G10760 Oryza nivara ONIVA12G10760 I 0.701
OMERI11G12590 Oryza meridionalis OMERI11G12590 I 0.701
ARF2 Arabidopsis thaliana AT5G62000 D 0.701
Bo2g161810 Brassica oleracea Bo2g161810 I 0.701
OGLUM01G46840 Oryza glumaepatula OGLUM01G46840 I 0.701
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.701
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.701
Bra035910 Brassica rapa Bra035910 I 0.701
OPUNC01G41560 Oryza punctata OPUNC01G41560 I 0.701
Bo9g014770 Brassica oleracea Bo9g014770 I 0.701
OBART11G15270 Oryza barthii OBART11G15270 I 0.701
OB11G21910 Oryza brachyantha OB11G21910 I 0.701
SapurV1A.0774s0040 Salix purpurea SapurV1A.0774s0040 I 0.701
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.701
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.701
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.701
Ca_05681 Cicer arietinum Ca_05681 I 0.701
OLONG_022378 Oryza longistaminata OLONG_022378 I 0.701
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.701
Si021216m.g Setaria italica Si021216m.g I 0.701
GSMUA_Achr6G08090_001 Musa acuminata GSMUA_Achr6G08090_001 I 0.701
OS11G0523800 Oryza sativa OS11G0523800 I 0.701
GSMUA_Achr4G10590_001 Musa acuminata GSMUA_Achr4G10590_001 I 0.701
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.701
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.701
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.701
LPERR11G11950 Leersia perrieri LPERR11G11950 I 0.701
MTR_7g062540 Medicago truncatula MTR_7g062540 I 0.701
mgf020855m Mimulus guttatus mgf020855m I 0.701
estExt_Genewise1.C_2800001 Physcomitrella patens estExt_Genewise1.C_2800001 I 0.701
TRAES3BF001100080CFD_g Triticum aestivum TRAES3BF001100080CFD_g I 0.701
ORGLA11G0129300 Oryza glaberrima ORGLA11G0129300 I 0.701
ORUFI11G16290 Oryza rufipogon ORUFI11G16290 I 0.701
Pm024588 Prunus mume Pm024588 I 0.701
MLOC_68907 Hordeum vulgare MLOC_68907 I 0.701
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.701
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.701
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.701
F775_32662 Aegilops tauschii F775_32662 I 0.701