CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J17623
(
Panicum virgatum
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Pavir.J17623
T023955_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF3
M00852_2.00
Arabidopsis thaliana
NKGTYBNN
NNVRACMN
PBM
Franco-Zorrilla et al.(2014)
ETTIN
0.833
0.833
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J17623.1.p
B3
33
135
FCKTLTTSDTSTHGGFSVPRRAAEDCFPPLDYEQLRPSQELIAKDLHGMKWRFRHIYRGQPRRHLLTTGWSSFINKKKLVSGDAVLFLRGSDGELRLGVRRAV
Links
Other
B3
family TFs
Other
Panicum virgatum
TFs
222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb09g025500
Sorghum bicolor
Sb09g025500
I
0.990
GRMZM2G441325
Zea mays
GRMZM2G441325
I
0.979
Si021589m.g
Setaria italica
Si021589m.g
I
0.979
Pavir.J38128
Panicum virgatum
Pavir.J38128
I
0.958
Pavir.J17853
Panicum virgatum
Pavir.J17853
I
0.927
Pavir.Eb03157
Panicum virgatum
Pavir.Eb03157
I
0.927
Sb03g034850
Sorghum bicolor
Sb03g034850
I
0.917
GRMZM5G874163
Zea mays
GRMZM5G874163
I
0.917
GRMZM2G056120
Zea mays
GRMZM2G056120
I
0.917
Si000545m.g
Setaria italica
Si000545m.g
I
0.906
TCM_029792
Theobroma cacao
TCM_029792
I
0.887
OB05G33320
Oryza brachyantha
OB05G33320
I
0.885
GSMUA_Achr10G26140_001
Musa acuminata
GSMUA_Achr10G26140_001
I
0.885
Traes_1AL_B14FE48AF
Triticum aestivum
Traes_1AL_B14FE48AF
I
0.865
ORUFI01G34340
Oryza rufipogon
ORUFI01G34340
I
0.865
Traes_1DL_92BCA55C0
Triticum aestivum
Traes_1DL_92BCA55C0
I
0.865
MLOC_38232
Hordeum vulgare
MLOC_38232
I
0.865
BGIOSGA000812
Oryza indica
BGIOSGA000812
I
0.865
Traes_3AL_A30A3C355
Triticum aestivum
Traes_3AL_A30A3C355
I
0.865
ARF3
Oryza sativa
OS01G0753500
I
0.865
ONIVA01G35630
Oryza nivara
ONIVA01G35630
I
0.865
OMERI01G28330
Oryza meridionalis
OMERI01G28330
I
0.865
Cucsa.052860
Cucumis sativus
Cucsa.052860
I
0.865
OBART01G31160
Oryza barthii
OBART01G31160
I
0.865
OGLUM01G35360
Oryza glumaepatula
OGLUM01G35360
I
0.865
TRIUR3_35254
Triticum urartu
TRIUR3_35254
I
0.865
OLONG_019459
Oryza longistaminata
OLONG_019459
I
0.865
BRADI2G19867
Brachypodium distachyon
BRADI2G19867
I
0.865
OB01G40150
Oryza brachyantha
OB01G40150
I
0.865
TRIUR3_14814
Triticum urartu
TRIUR3_14814
I
0.865
ORUFI01G28960
Oryza rufipogon
ORUFI01G28960
I
0.856
OLONG_023172
Oryza longistaminata
OLONG_023172
I
0.856
ORGLA01G0213000
Oryza glaberrima
ORGLA01G0213000
I
0.856
LPERR01G22260
Leersia perrieri
LPERR01G22260
I
0.856
ONIVA01G29290
Oryza nivara
ONIVA01G29290
I
0.856
OMERI01G23690
Oryza meridionalis
OMERI01G23690
I
0.856
OBART01G26040
Oryza barthii
OBART01G26040
I
0.856
OPUNC01G25930
Oryza punctata
OPUNC01G25930
I
0.856
OS01G0670800
Oryza sativa
OS01G0670800
I
0.856
OGLUM01G29850
Oryza glumaepatula
OGLUM01G29850
I
0.856
BGIOSGA001046
Oryza indica
BGIOSGA001046
I
0.856
LPERR01G26810
Leersia perrieri
LPERR01G26810
I
0.854
BRADI2G50120
Brachypodium distachyon
BRADI2G50120
I
0.854
Cla000568
Citrullus lanatus
Cla000568
I
0.854
OPUNC01G30260
Oryza punctata
OPUNC01G30260
I
0.854
Traes_3DL_734F1498E
Triticum aestivum
Traes_3DL_734F1498E
I
0.847
F775_02482
Aegilops tauschii
F775_02482
I
0.847
MLOC_66439
Hordeum vulgare
MLOC_66439
I
0.847
GSMUA_Achr4G10590_001
Musa acuminata
GSMUA_Achr4G10590_001
I
0.845
MTR_2g014770
Medicago truncatula
MTR_2g014770
I
0.844
OB01G35190
Oryza brachyantha
OB01G35190
I
0.844
OGLUM05G23980
Oryza glumaepatula
OGLUM05G23980
I
0.833
Gorai.011G030900
Gossypium raimondii
Gorai.011G030900
I
0.833
Gorai.010G157400
Gossypium raimondii
Gorai.010G157400
I
0.833
Pm031349
Prunus mume
Pm031349
I
0.833
Ca_06352
Cicer arietinum
Ca_06352
I
0.833
TRIUR3_33948
Triticum urartu
TRIUR3_33948
I
0.833
OMERI05G20390
Oryza meridionalis
OMERI05G20390
I
0.833
Pavir.Ca00928
Panicum virgatum
Pavir.Ca00928
I
0.833
POPTR_0004s04970
Populus trichocarpa
POPTR_0004s04970
I
0.833
ORGLA05G0198900
Oryza glaberrima
ORGLA05G0198900
I
0.833
ONIVA05G23630
Oryza nivara
ONIVA05G23630
I
0.833
POPTR_0011s05830
Populus trichocarpa
POPTR_0011s05830
I
0.833
PK18282.1
Cannabis sativa
PK18282.1
I
0.833
Si004598m.g
Setaria italica
Si004598m.g
I
0.833
SapurV1A.0012s0780
Salix purpurea
SapurV1A.0012s0780
I
0.833
SapurV1A.0032s0660
Salix purpurea
SapurV1A.0032s0660
I
0.833
PRUPE_ppa002065m1g
Prunus persica
PRUPE_ppa002065m1g
I
0.833
GLYMA15G08540
Glycine max
GLYMA15G08540
I
0.833
GLYMA13G24240
Glycine max
GLYMA13G24240
I
0.833
GLYMA07G32300
Glycine max
GLYMA07G32300
I
0.833
GRMZM2G030710
Zea mays
GRMZM2G030710
I
0.833
OBART05G22670
Oryza barthii
OBART05G22670
I
0.833
Bra021885
Brassica rapa
Bra021885
I
0.833
OPUNC05G23400
Oryza punctata
OPUNC05G23400
I
0.827
OPUNC05G23380
Oryza punctata
OPUNC05G23380
I
0.827
Sb09g028450
Sorghum bicolor
Sb09g028450
I
0.827
Lus10005264.g
Linum usitatissimum
Lus10005264.g
I
0.827
gene29771-v1.0-hybrid
Fragaria vesca
gene29771-v1.0-hybrid
I
0.827
ORGLA05G0222700
Oryza glaberrima
ORGLA05G0222700
I
0.827
BGIOSGA020357
Oryza indica
BGIOSGA020357
I
0.827
Lus10013942.g
Linum usitatissimum
Lus10013942.g
I
0.827
ONIVA05G27700
Oryza nivara
ONIVA05G27700
I
0.827
OBART05G25790
Oryza barthii
OBART05G25790
I
0.827
PDK_20s1465161g002
Phoenix dactylifera
PDK_20s1465161g002
I
0.827
OGLUM05G27420
Oryza glumaepatula
OGLUM05G27420
I
0.827
Si021595m.g
Setaria italica
Si021595m.g
I
0.827
LPERR05G21420
Leersia perrieri
LPERR05G21420
I
0.827
BRADI2G46190
Brachypodium distachyon
BRADI2G46190
I
0.827
Pavir.J08401
Panicum virgatum
Pavir.J08401
I
0.827
TRIUR3_24520
Triticum urartu
TRIUR3_24520
I
0.825
Traes_3AL_561A00448
Triticum aestivum
Traes_3AL_561A00448
I
0.825
Eucgr.D00588
Eucalyptus grandis
Eucgr.D00588
I
0.823
evm.TU.supercontig_7.3
Carica papaya
evm.TU.supercontig_7.3
I
0.823
OS05G0515400
Oryza sativa
OS05G0515400
I
0.823
TRAES3BF097400050CFD_g
Triticum aestivum
TRAES3BF097400050CFD_g
I
0.823
cassava1599.valid.m1
Manihot esculenta
cassava1599.valid.m1
I
0.823
mgf016063m
Mimulus guttatus
mgf016063m
I
0.823
29900.m001540
Ricinus communis
29900.m001540
I
0.823
ORUFI05G24090
Oryza rufipogon
ORUFI05G24090
I
0.823
LjSGA_059669.1
Lotus japonicus
LjSGA_059669.1
I
0.823
OPUNC05G20300
Oryza punctata
OPUNC05G20300
I
0.823
Pavir.Eb02716
Panicum virgatum
Pavir.Eb02716
I
0.823
LjSGA_103336.1
Lotus japonicus
LjSGA_103336.1
I
0.823
MTR_4g088210
Medicago truncatula
MTR_4g088210
I
0.823
PDK_20s1663351g001
Phoenix dactylifera
PDK_20s1663351g001
I
0.823
Gorai.009G166100
Gossypium raimondii
Gorai.009G166100
I
0.823
ARF3
Arabidopsis thaliana
AT2G33860
D
0.816
ETT
Arabidopsis lyrata
scaffold_401977.1
I
0.816
Thhalv10016394m.g
Eutrema salsugineum
Thhalv10016394m.g
I
0.816
orange1.1g004106m.g
Citrus sinensis
orange1.1g004106m.g
I
0.816
OB05G30280
Oryza brachyantha
OB05G30280
I
0.816
ETT
Vitis vinifera
VIT_10s0003g00420
I
0.816
Bra005465
Brassica rapa
Bra005465
I
0.816
GLYMA13G30750
Glycine max
GLYMA13G30750
I
0.816
Carubv10025185m.g
Capsella rubella
Carubv10025185m.g
I
0.816
Cagra.1195s0014
Capsella grandiflora
Cagra.1195s0014
I
0.816
Ciclev10014391m.g
Citrus clementina
Ciclev10014391m.g
I
0.816
ARF15
Oryza sativa
OS05G0563400
I
0.816
BRADI2G16610
Brachypodium distachyon
BRADI2G16610
I
0.816
Bostr.23794s0705
Boechera stricta
Bostr.23794s0705
I
0.816
Bo4g041340
Brassica oleracea
Bo4g041340
I
0.816
MDP0000179650
Malus domestica
MDP0000179650
I
0.816
ORUFI05G27690
Oryza rufipogon
ORUFI05G27690
I
0.816
Bo4g182310
Brassica oleracea
Bo4g182310
I
0.816
MDP0000173151
Malus domestica
MDP0000173151
I
0.816
Pavir.J35323
Panicum virgatum
Pavir.J35323
I
0.814
gene28545-v1.0-hybrid
Fragaria vesca
gene28545-v1.0-hybrid
I
0.812
Aquca_051_00062
Aquilegia coerulea
Aquca_051_00062
I
0.812
Cucsa.046570
Cucumis sativus
Cucsa.046570
I
0.812
Pm000994
Prunus mume
Pm000994
I
0.812
Cla009812
Citrullus lanatus
Cla009812
I
0.812
Ca_14590
Cicer arietinum
Ca_14590
I
0.812
GSMUA_Achr7G25330_001
Musa acuminata
GSMUA_Achr7G25330_001
I
0.812
PRUPE_ppa001557mg
Prunus persica
PRUPE_ppa001557mg
I
0.812
MTR_4g060460
Medicago truncatula
MTR_4g060460
I
0.812
Sb03g030740
Sorghum bicolor
Sb03g030740
I
0.806
MDP0000412781
Malus domestica
MDP0000412781
I
0.802
SELMODRAFT_438973
Selaginella moellendorffii
SELMODRAFT_438973
I
0.802
ARF4
Vitis vinifera
VIT_06s0004g03130
I
0.802
MDP0000225980
Malus domestica
MDP0000225980
I
0.802
orange1.1g003580m.g
Citrus sinensis
orange1.1g003580m.g
I
0.802
Ciclev10027839m.g
Citrus clementina
Ciclev10027839m.g
I
0.802
SELMODRAFT_437944
Selaginella moellendorffii
SELMODRAFT_437944
I
0.802
PK07904.1
Cannabis sativa
PK07904.1
I
0.802
PGSC0003DMG400031769
Solanum tuberosum
PGSC0003DMG400031769
I
0.798
Solyc02g077560.2
Solanum lycopersicum
Solyc02g077560.2
I
0.798
30111.m000734
Ricinus communis
30111.m000734
I
0.796
cassava830.valid.m1
Manihot esculenta
cassava830.valid.m1
I
0.796
GSMUA_Achr3G31350_001
Musa acuminata
GSMUA_Achr3G31350_001
I
0.796
LPERR05G18660
Leersia perrieri
LPERR05G18660
I
0.796
GSMUA_Achr4G02750_001
Musa acuminata
GSMUA_Achr4G02750_001
I
0.794
Cagra.2519s0017
Capsella grandiflora
Cagra.2519s0017
I
0.792
Bostr.26833s0196
Boechera stricta
Bostr.26833s0196
I
0.792
Traes_3DL_5C378695E
Triticum aestivum
Traes_3DL_5C378695E
I
0.792
POPTR_0009s01700
Populus trichocarpa
POPTR_0009s01700
I
0.792
Carubv10025912m.g
Capsella rubella
Carubv10025912m.g
I
0.792
GLYMA12G07560
Glycine max
GLYMA12G07560
I
0.792
cassava6009.valid.m1
Manihot esculenta
cassava6009.valid.m1
I
0.792
GSMUA_Achr7G11000_001
Musa acuminata
GSMUA_Achr7G11000_001
I
0.792
evm.TU.supercontig_139.80
Carica papaya
evm.TU.supercontig_139.80
I
0.792
Aquca_027_00067
Aquilegia coerulea
Aquca_027_00067
I
0.792
Gorai.006G120400
Gossypium raimondii
Gorai.006G120400
I
0.786
GRMZM2G437460
Zea mays
GRMZM2G437460
I
0.786
Eucgr.B02480
Eucalyptus grandis
Eucgr.B02480
I
0.786
TCM_041071
Theobroma cacao
TCM_041071
I
0.786
GLYMA12G29280
Glycine max
GLYMA12G29280
I
0.781
Bo2g024860
Brassica oleracea
Bo2g024860
I
0.781
Ciclev10000976m.g
Citrus clementina
Ciclev10000976m.g
I
0.781
orange1.1g012439m.g
Citrus sinensis
orange1.1g012439m.g
I
0.781
ARF4
Arabidopsis thaliana
AT5G60450
I
0.781
Thhalv10012728m.g
Eutrema salsugineum
Thhalv10012728m.g
I
0.781
PGSC0003DMG400008065
Solanum tuberosum
PGSC0003DMG400008065
I
0.781
SapurV1A.0240s0100
Salix purpurea
SapurV1A.0240s0100
I
0.776
AMTR_s00034p00110140
Amborella trichopoda
AMTR_s00034p00110140
I
0.776
chr3.CM0111.110.nd
Lotus japonicus
chr3.CM0111.110.nd
I
0.776
AMTR_s00021p00200760
Amborella trichopoda
AMTR_s00021p00200760
I
0.776
Aquca_036_00025
Aquilegia coerulea
Aquca_036_00025
I
0.776
Solyc11g069190.1
Solanum lycopersicum
Solyc11g069190.1
I
0.771
Bo9g143570
Brassica oleracea
Bo9g143570
I
0.771
Bra002479
Brassica rapa
Bra002479
I
0.771
SELMODRAFT_430287
Selaginella moellendorffii
SELMODRAFT_430287
I
0.771
MTR_2g093740
Medicago truncatula
MTR_2g093740
I
0.765
GLYMA11G15910
Glycine max
GLYMA11G15910
I
0.765
SELMODRAFT_166729
Selaginella moellendorffii
SELMODRAFT_166729
I
0.760
Thhalv10012074m.g
Eutrema salsugineum
Thhalv10012074m.g
I
0.760
ARF4
Arabidopsis lyrata
fgenesh2_kg.8__2008__AT5G60450.1
I
0.747
mgf011102m
Mimulus guttatus
mgf011102m
I
0.745
Gorai.009G078800
Gossypium raimondii
Gorai.009G078800
I
0.745
estExt_Genewise1.C_2800001
Physcomitrella patens
estExt_Genewise1.C_2800001
I
0.740
estExt_Genewise1.C_140304
Physcomitrella patens
estExt_Genewise1.C_140304
I
0.740
GRMZM2G137413
Zea mays
GRMZM2G137413
I
0.737
Pavir.Ab01961
Panicum virgatum
Pavir.Ab01961
I
0.737
gw1.341.65.1
Physcomitrella patens
gw1.341.65.1
I
0.732
Cucsa.117420
Cucumis sativus
Cucsa.117420
I
0.731
Pavir.Aa01676
Panicum virgatum
Pavir.Aa01676
I
0.729
Si016562m.g
Setaria italica
Si016562m.g
I
0.729
e_gw1.64.107.1
Physcomitrella patens
e_gw1.64.107.1
I
0.729
GRMZM2G702026
Zea mays
GRMZM2G702026
I
0.729
Aquca_008_00175
Aquilegia coerulea
Aquca_008_00175
I
0.728
OB02G28170
Oryza brachyantha
OB02G28170
I
0.726
MLOC_64596
Hordeum vulgare
MLOC_64596
I
0.708
AMTR_s00057p00141830
Amborella trichopoda
AMTR_s00057p00141830
I
0.708
OMERI04G12260
Oryza meridionalis
OMERI04G12260
I
0.708
OGLUM04G13380
Oryza glumaepatula
OGLUM04G13380
I
0.708
BRADI3G45880
Brachypodium distachyon
BRADI3G45880
I
0.708
OPUNC04G11520
Oryza punctata
OPUNC04G11520
I
0.708
ORUFI04G14900
Oryza rufipogon
ORUFI04G14900
I
0.708
evm.TU.supercontig_15.1
Carica papaya
evm.TU.supercontig_15.1
I
0.708
ARF9
Oryza sativa
OS04G0442000
I
0.708
ONIVA04G11850
Oryza nivara
ONIVA04G11850
I
0.708
GSMUA_Achr10G16170_001
Musa acuminata
GSMUA_Achr10G16170_001
I
0.708
BGIOSGA016467
Oryza indica
BGIOSGA016467
I
0.708
GSMUA_Achr6G29070_001
Musa acuminata
GSMUA_Achr6G29070_001
I
0.708
ORGLA04G0107000
Oryza glaberrima
ORGLA04G0107000
I
0.708
AMTR_s00016p00168950
Amborella trichopoda
AMTR_s00016p00168950
I
0.701
BRADI5G10950
Brachypodium distachyon
BRADI5G10950
I
0.701
PDK_20s1869091g001
Phoenix dactylifera
PDK_20s1869091g001
I
0.701
30128.m008545
Ricinus communis
30128.m008545
I
0.701
GSMUA_Achr5G26580_001
Musa acuminata
GSMUA_Achr5G26580_001
I
0.701
Gorai.007G044900
Gossypium raimondii
Gorai.007G044900
I
0.701
Traes_2BL_1AED96909
Triticum aestivum
Traes_2BL_1AED96909
I
0.701