Pavir.J22605 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.J22605 T023969_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF2
M06714_2.00
Arabidopsis thaliana
NHTGTCKSHD

HDSMGACADN
Dap-seq
OMalley et al.(2016)
ARF2_col_v31
0.845 0.845
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J22605.1.p B3 60 158

Links

Other B3 family TFs
Other Panicum virgatum TFs

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OGLUM11G14710 Oryza glumaepatula OGLUM11G14710 I 0.867
ORUFI11G16290 Oryza rufipogon ORUFI11G16290 I 0.867
LPERR11G11950 Leersia perrieri LPERR11G11950 I 0.867
OB11G21910 Oryza brachyantha OB11G21910 I 0.867
OS11G0523800 Oryza sativa OS11G0523800 I 0.867
OBART11G15270 Oryza barthii OBART11G15270 I 0.867
ARF23 Oryza indica BGIOSGA033901 I 0.867
OLONG_022378 Oryza longistaminata OLONG_022378 I 0.867
ORGLA11G0129300 Oryza glaberrima ORGLA11G0129300 I 0.867
ONIVA12G10760 Oryza nivara ONIVA12G10760 I 0.867
LPERR12G09930 Leersia perrieri LPERR12G09930 I 0.867
OPUNC11G12650 Oryza punctata OPUNC11G12650 I 0.867
OMERI11G12590 Oryza meridionalis OMERI11G12590 I 0.867
OB12G20020 Oryza brachyantha OB12G20020 I 0.866
PDK_20s1651081g001 Phoenix dactylifera PDK_20s1651081g001 I 0.860
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.856
Si000340m.g Setaria italica Si000340m.g I 0.856
Si021216m.g Setaria italica Si021216m.g I 0.856
mgf015308m Mimulus guttatus mgf015308m I 0.856
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.856
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.856
Cla019614 Citrullus lanatus Cla019614 I 0.856
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.856
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.856
mgf006511m Mimulus guttatus mgf006511m I 0.856
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.856
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.856
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.856
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.856
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.856
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.856
PK16974.1 Cannabis sativa PK16974.1 I 0.856
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.856
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.856
MDP0000258032 Malus domestica MDP0000258032 I 0.856
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.856
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.847
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.847
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.847
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.847
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.847
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.847
Ca_05681 Cicer arietinum Ca_05681 I 0.845
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.845
mgf020855m Mimulus guttatus mgf020855m I 0.845
GSMUA_Achr6G08090_001 Musa acuminata GSMUA_Achr6G08090_001 I 0.837
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.837
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.837
PGSC0003DMG400014179 Solanum tuberosum PGSC0003DMG400014179 I 0.837
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.837
Sb08g014320 Sorghum bicolor Sb08g014320 I 0.837
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.837
TCM_014743 Theobroma cacao TCM_014743 I 0.837
OGLUM01G46840 Oryza glumaepatula OGLUM01G46840 I 0.837
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.837
Bra010048 Brassica rapa Bra010048 I 0.837
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.837
MDP0000310875 Malus domestica MDP0000310875 I 0.837
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.837
Pm024588 Prunus mume Pm024588 I 0.837
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.837
Bo9g014770 Brassica oleracea Bo9g014770 I 0.837
Bo3g108130 Brassica oleracea Bo3g108130 I 0.837
ARF2 Arabidopsis thaliana AT5G62000 D 0.837
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.837
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.837
SapurV1A.0672s0210 Salix purpurea SapurV1A.0672s0210 I 0.837
Bo2g161810 Brassica oleracea Bo2g161810 I 0.837
SapurV1A.0517s0240 Salix purpurea SapurV1A.0517s0240 I 0.837
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.837
Bra035910 Brassica rapa Bra035910 I 0.837
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.837
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.837
OPUNC01G41560 Oryza punctata OPUNC01G41560 I 0.837
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.837
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.837
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.837
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.837
F775_31280 Aegilops tauschii F775_31280 I 0.837
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.837
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.837
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.837
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.835
Traes_3DL_1FC3735D9 Triticum aestivum Traes_3DL_1FC3735D9 I 0.831
Eucgr.K02197 Eucalyptus grandis Eucgr.K02197 I 0.831
ORGLA01G0363100 Oryza glaberrima ORGLA01G0363100 I 0.827
VIT_01s0244g00150 Vitis vinifera VIT_01s0244g00150 I 0.827
ARF4 Oryza sativa OS01G0927600 I 0.827
ORUFI01G45980 Oryza rufipogon ORUFI01G45980 I 0.827
SapurV1A.0774s0040 Salix purpurea SapurV1A.0774s0040 I 0.827
TRAES3BF001100080CFD_g Triticum aestivum TRAES3BF001100080CFD_g I 0.827
MLOC_68907 Hordeum vulgare MLOC_68907 I 0.827
F775_32662 Aegilops tauschii F775_32662 I 0.827
OBART01G42570 Oryza barthii OBART01G42570 I 0.827
BGIOSGA005099 Oryza indica BGIOSGA005099 I 0.827
BRADI2G59480 Brachypodium distachyon BRADI2G59480 I 0.827
OMERI01G39560 Oryza meridionalis OMERI01G39560 I 0.827
ONIVA01G48620 Oryza nivara ONIVA01G48620 I 0.827
PDK_20s1869091g001 Phoenix dactylifera PDK_20s1869091g001 I 0.825
GRMZM2G378580 Zea mays GRMZM2G378580 I 0.825
TRIUR3_17755 Triticum urartu TRIUR3_17755 I 0.825
Traes_3DL_BC7A7E056 Triticum aestivum Traes_3DL_BC7A7E056 I 0.817
TCM_008374 Theobroma cacao TCM_008374 I 0.816
evm.TU.contig_31756 Carica papaya evm.TU.contig_31756 I 0.816
GSMUA_AchrUn_randomG14770_001 Musa acuminata GSMUA_AchrUn_randomG14770_001 I 0.806
BRADI4G07470 Brachypodium distachyon BRADI4G07470 I 0.806
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.806
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.804
GSMUA_Achr10G16170_001 Musa acuminata GSMUA_Achr10G16170_001 I 0.800
30128.m008545 Ricinus communis 30128.m008545 I 0.794
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.794
Gorai.007G044900 Gossypium raimondii Gorai.007G044900 I 0.794
GSMUA_Achr6G12780_001 Musa acuminata GSMUA_Achr6G12780_001 I 0.792
OB02G28170 Oryza brachyantha OB02G28170 I 0.789
Pavir.Ab01961 Panicum virgatum Pavir.Ab01961 I 0.789
GRMZM2G137413 Zea mays GRMZM2G137413 I 0.789
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.784
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.784
Si016562m.g Setaria italica Si016562m.g I 0.784
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.784
AMTR_s00016p00168950 Amborella trichopoda AMTR_s00016p00168950 I 0.784
GSMUA_Achr9G08310_001 Musa acuminata GSMUA_Achr9G08310_001 I 0.784
PDK_20s1428911g001 Phoenix dactylifera PDK_20s1428911g001 I 0.780
PDK_20s1394651g001 Phoenix dactylifera PDK_20s1394651g001 I 0.776
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.773
Traes_2BL_1AED96909 Triticum aestivum Traes_2BL_1AED96909 I 0.773
MDP0000929655 Malus domestica MDP0000929655 I 0.773
PK12669.1 Cannabis sativa PK12669.1 I 0.773
BRADI5G10950 Brachypodium distachyon BRADI5G10950 I 0.773
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.773
LjSGA_022281.1 Lotus japonicus LjSGA_022281.1 I 0.773
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.773
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.773
GLYMA16G00220 Glycine max GLYMA16G00220 I 0.773
POPTR_0001s13110 Populus trichocarpa POPTR_0001s13110 I 0.773
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.773
MTR_2g005240 Medicago truncatula MTR_2g005240 I 0.773
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.773
ORUFI04G14900 Oryza rufipogon ORUFI04G14900 I 0.771
ARF9 Oryza sativa OS04G0442000 I 0.771
OMERI04G12260 Oryza meridionalis OMERI04G12260 I 0.771
BGIOSGA016467 Oryza indica BGIOSGA016467 I 0.771
OGLUM04G13380 Oryza glumaepatula OGLUM04G13380 I 0.771
ONIVA04G11850 Oryza nivara ONIVA04G11850 I 0.771
ORGLA04G0107000 Oryza glaberrima ORGLA04G0107000 I 0.771
cassava44132.valid.m1 Manihot esculenta cassava44132.valid.m1 I 0.763
cassava44131.valid.m1 Manihot esculenta cassava44131.valid.m1 I 0.763
SapurV1A.0499s0060 Salix purpurea SapurV1A.0499s0060 I 0.763
cassava47301.m1 Manihot esculenta cassava47301.m1 I 0.763
OB04G20880 Oryza brachyantha OB04G20880 I 0.763
POPTR_0003s16210 Populus trichocarpa POPTR_0003s16210 I 0.763
cassava47300.m1 Manihot esculenta cassava47300.m1 I 0.763
cassava47299.m1 Manihot esculenta cassava47299.m1 I 0.763
cassava47298.m1 Manihot esculenta cassava47298.m1 I 0.763
cassava47297.m1 Manihot esculenta cassava47297.m1 I 0.763
cassava47296.m1 Manihot esculenta cassava47296.m1 I 0.763
TCM_027113 Theobroma cacao TCM_027113 I 0.763
Sb06g017490 Sorghum bicolor Sb06g017490 I 0.760
Pavir.Gb01617 Panicum virgatum Pavir.Gb01617 I 0.760
Pavir.Ga01750 Panicum virgatum Pavir.Ga01750 I 0.760
Si009558m.g Setaria italica Si009558m.g I 0.760
orange1.1g005491m.g Citrus sinensis orange1.1g005491m.g I 0.754
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.753
GSMUA_Achr6G29070_001 Musa acuminata GSMUA_Achr6G29070_001 I 0.753
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.753
GRMZM2G017187 Zea mays GRMZM2G017187 I 0.750
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.745
30068.m002516 Ricinus communis 30068.m002516 I 0.745
POPTR_0003s14200 Populus trichocarpa POPTR_0003s14200 I 0.745
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.745
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.745
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.745
PK02218.1 Cannabis sativa PK02218.1 I 0.742
TCM_005126 Theobroma cacao TCM_005126 I 0.742
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.742
Ciclev10003317m.g Citrus clementina Ciclev10003317m.g I 0.742
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.742
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.742
Gorai.003G078000 Gossypium raimondii Gorai.003G078000 I 0.735
Cagra.0483s0062 Capsella grandiflora Cagra.0483s0062 I 0.735
Carubv10018954m.g Capsella rubella Carubv10018954m.g I 0.735
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.735
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.735
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.735
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.735
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.735
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.735
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.735
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.735
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.735
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.735
TCM_016500 Theobroma cacao TCM_016500 I 0.735
evm.TU.supercontig_96.40 Carica papaya evm.TU.supercontig_96.40 I 0.735
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.735
OLONG_013033 Oryza longistaminata OLONG_013033 I 0.733
Ciclev10019131m.g Citrus clementina Ciclev10019131m.g I 0.732
Bra014419 Brassica rapa Bra014419 I 0.732
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.732
ARF18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002633 I 0.732
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.732
Ca_23296 Cicer arietinum Ca_23296 I 0.732
Pm018352 Prunus mume Pm018352 I 0.732
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.732
PRUPE_ppa002230mg Prunus persica PRUPE_ppa002230mg I 0.732
Cla013021 Citrullus lanatus Cla013021 I 0.732
ARF18 Arabidopsis thaliana AT3G61830 I 0.732
cassava43609.valid.m1 Manihot esculenta cassava43609.valid.m1 I 0.732
Bo8g097320 Brassica oleracea Bo8g097320 I 0.732
Bo01141s010 Brassica oleracea Bo01141s010 I 0.732
GLYMA18G40180 Glycine max GLYMA18G40180 I 0.724
Gorai.001G153900 Gossypium raimondii Gorai.001G153900 I 0.724
Thhalv10005857m.g Eutrema salsugineum Thhalv10005857m.g I 0.724
PK07332.1 Cannabis sativa PK07332.1 I 0.724
Lus10032413.g Linum usitatissimum Lus10032413.g I 0.724
MDP0000139073 Malus domestica MDP0000139073 I 0.724
Bostr.13158s0186 Boechera stricta Bostr.13158s0186 I 0.724
GLYMA01G25270 Glycine max GLYMA01G25270 I 0.724
GLYMA07G16170 Glycine max GLYMA07G16170 I 0.724
MDP0000194603 Malus domestica MDP0000194603 I 0.724
Lus10023058.g Linum usitatissimum Lus10023058.g I 0.724
orange1.1g005368m.g Citrus sinensis orange1.1g005368m.g I 0.722
ARF11 Arabidopsis thaliana AT2G46530 I 0.722
Ciclev10019174m.g Citrus clementina Ciclev10019174m.g I 0.722
Bostr.25993s0113 Boechera stricta Bostr.25993s0113 I 0.722
Carubv10022841m.g Capsella rubella Carubv10022841m.g I 0.722
Ca_21948 Cicer arietinum Ca_21948 I 0.722
GSMUA_Achr10G15100_001 Musa acuminata GSMUA_Achr10G15100_001 I 0.722
Cagra.0050s0046 Capsella grandiflora Cagra.0050s0046 I 0.722
Bra029293 Brassica rapa Bra029293 I 0.719
PGSC0003DMG400000118 Solanum tuberosum PGSC0003DMG400000118 I 0.717
Aquca_013_00067 Aquilegia coerulea Aquca_013_00067 I 0.714
Bo7g109250 Brassica oleracea Bo7g109250 I 0.714
SapurV1A.1529s0070 Salix purpurea SapurV1A.1529s0070 I 0.714
PRUPE_ppa002617mg Prunus persica PRUPE_ppa002617mg I 0.714
GSMUA_Achr7G24330_001 Musa acuminata GSMUA_Achr7G24330_001 I 0.714
Pm024149 Prunus mume Pm024149 I 0.714
GLYMA03G41920 Glycine max GLYMA03G41920 I 0.714
cassava29828.valid.m1 Manihot esculenta cassava29828.valid.m1 I 0.714
PGSC0003DMG400012261 Solanum tuberosum PGSC0003DMG400012261 I 0.714
mgf005549m Mimulus guttatus mgf005549m I 0.714
Gorai.007G109500 Gossypium raimondii Gorai.007G109500 I 0.714
POPTR_0002s17350 Populus trichocarpa POPTR_0002s17350 I 0.714
Bra019255 Brassica rapa Bra019255 I 0.714
Eucgr.E00888 Eucalyptus grandis Eucgr.E00888 I 0.714
MTR_7g062540 Medicago truncatula MTR_7g062540 I 0.711
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.711
Bo3g039330 Brassica oleracea Bo3g039330 I 0.711
evm.TU.supercontig_15.1 Carica papaya evm.TU.supercontig_15.1 I 0.711
Aquca_003_00899 Aquilegia coerulea Aquca_003_00899 I 0.711
cassava6009.valid.m1 Manihot esculenta cassava6009.valid.m1 I 0.711
SELMODRAFT_438973 Selaginella moellendorffii SELMODRAFT_438973 I 0.708
SELMODRAFT_437944 Selaginella moellendorffii SELMODRAFT_437944 I 0.708
chr1.LjT43L07.10.nd Lotus japonicus chr1.LjT43L07.10.nd I 0.708
Solyc01g096070.2 Solanum lycopersicum Solyc01g096070.2 I 0.707
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.707
30147.m014418 Ricinus communis 30147.m014418 I 0.707
gene19138-v1.0-hybrid Fragaria vesca gene19138-v1.0-hybrid I 0.704
ARF11 Arabidopsis lyrata scaffold_403621.1 I 0.704
Gorai.006G120400 Gossypium raimondii Gorai.006G120400 I 0.704
chr3.CM0111.110.nd Lotus japonicus chr3.CM0111.110.nd I 0.704
POPTR_0014s09560 Populus trichocarpa POPTR_0014s09560 I 0.704
Eucgr.B02480 Eucalyptus grandis Eucgr.B02480 I 0.704
Bostr.7867s0204 Boechera stricta Bostr.7867s0204 I 0.704
gene25123-v1.0-hybrid Fragaria vesca gene25123-v1.0-hybrid I 0.704
TCM_041071 Theobroma cacao TCM_041071 I 0.704
MDP0000412781 Malus domestica MDP0000412781 I 0.704
GSMUA_AchrUn_randomG11300_001 Musa acuminata GSMUA_AchrUn_randomG11300_001 I 0.704
ARF9 Arabidopsis thaliana AT4G23980 I 0.704
GLYMA07G06060 Glycine max GLYMA07G06060 I 0.704
GLYMA16G02650 Glycine max GLYMA16G02650 I 0.704
Gorai.009G078800 Gossypium raimondii Gorai.009G078800 I 0.704
Bo1g037360 Brassica oleracea Bo1g037360 I 0.704
Thhalv10001365m.g Eutrema salsugineum Thhalv10001365m.g I 0.704
Thhalv10024554m.g Eutrema salsugineum Thhalv10024554m.g I 0.704
estExt_Genewise1.C_140304 Physcomitrella patens estExt_Genewise1.C_140304 I 0.701
Bo4g008150 Brassica oleracea Bo4g008150 I 0.701
Pm000994 Prunus mume Pm000994 I 0.701
Bra013748 Brassica rapa Bra013748 I 0.701
Bra004530 Brassica rapa Bra004530 I 0.701
GLYMA12G07560 Glycine max GLYMA12G07560 I 0.701
e_gw1.64.107.1 Physcomitrella patens e_gw1.64.107.1 I 0.701
gene28545-v1.0-hybrid Fragaria vesca gene28545-v1.0-hybrid I 0.701
PRUPE_ppa001557mg Prunus persica PRUPE_ppa001557mg I 0.701