Pavir.J26437 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.J26437 T023977_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.938 0.938
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J26437.1.p B3 122 224

Links

Other B3 family TFs
Other Panicum virgatum TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OBART06G25230 Oryza barthii OBART06G25230 I 1.000
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 1.000
OB06G32920 Oryza brachyantha OB06G32920 I 1.000
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 1.000
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 1.000
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 1.000
Sb10g027790 Sorghum bicolor Sb10g027790 I 1.000
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 1.000
Si005991m.g Setaria italica Si005991m.g I 1.000
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 1.000
ARF18 Oryza sativa OS06G0685700 I 1.000
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 1.000
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.990
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.990
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.969
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.959
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.959
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.959
MDP0000221322 Malus domestica MDP0000221322 I 0.959
MDP0000131481 Malus domestica MDP0000131481 I 0.959
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.948
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.948
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.948
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.948
ARF22 Oryza sativa OS10G0479900 I 0.948
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.948
Pm031275 Prunus mume Pm031275 I 0.948
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.948
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.948
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.948
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.948
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.948
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.948
OBART10G13410 Oryza barthii OBART10G13410 I 0.948
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.948
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.948
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.948
Si034525m.g Setaria italica Si034525m.g I 0.948
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.948
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.948
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.947
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.938
TCM_043157 Theobroma cacao TCM_043157 I 0.938
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.938
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.938
Cla018574 Citrullus lanatus Cla018574 I 0.938
F775_32978 Aegilops tauschii F775_32978 I 0.938
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.938
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.938
mgf005300m Mimulus guttatus mgf005300m I 0.938
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.938
27538.m000327 Ricinus communis 27538.m000327 I 0.938
Pm030120 Prunus mume Pm030120 I 0.938
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.938
ARF16 Arabidopsis thaliana AT4G30080 D 0.938
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.938
TCM_042067 Theobroma cacao TCM_042067 I 0.938
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.938
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.938
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.938
Bra011162 Brassica rapa Bra011162 I 0.938
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.938
OB10G20590 Oryza brachyantha OB10G20590 I 0.938
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.938
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.938
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.938
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.938
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.938
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.938
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.938
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.938
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.938
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.928
PK17007.1 Cannabis sativa PK17007.1 I 0.928
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.928
Bo7g114200 Brassica oleracea Bo7g114200 I 0.928
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.928
Bo1g014600 Brassica oleracea Bo1g014600 I 0.928
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.928
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.928
30078.m002329 Ricinus communis 30078.m002329 I 0.928
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.928
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.928
TCM_022163 Theobroma cacao TCM_022163 I 0.928
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.928
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.928
Ca_02541 Cicer arietinum Ca_02541 I 0.927
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.926
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.918
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.918
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.918
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.918
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.918
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.918
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.918
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.918
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.918
Bra024109 Brassica rapa Bra024109 I 0.918
mgf016139m Mimulus guttatus mgf016139m I 0.917
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.907
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.907
Ca_26121 Cicer arietinum Ca_26121 I 0.907
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.907
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.907
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.907
MDP0000750392 Malus domestica MDP0000750392 I 0.907
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.907
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.907
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.907
Pm018533 Prunus mume Pm018533 I 0.907
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.907
mgf024607m Mimulus guttatus mgf024607m I 0.907
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.907
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.907
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.907
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.906
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.906
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.906
PK13064.1 Cannabis sativa PK13064.1 I 0.897
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.897
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.897
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.897
Ca_17136 Cicer arietinum Ca_17136 I 0.897
Si016509m.g Setaria italica Si016509m.g I 0.897
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.897
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.897
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.897
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.897
ARF8 Oryza sativa OS02G0628600 I 0.897
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.897
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.897
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.897
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.897
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.897
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.897
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.897
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.897
ARF10 Arabidopsis thaliana AT2G28350 I 0.897
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.897
OB02G32150 Oryza brachyantha OB02G32150 I 0.896
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.896
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.887
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.887
Cla008883 Citrullus lanatus Cla008883 I 0.887
Bra011955 Brassica rapa Bra011955 I 0.887
mgf000336m Mimulus guttatus mgf000336m I 0.887
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.887
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.887
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.887
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.887
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.887
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.887
Cla013979 Citrullus lanatus Cla013979 I 0.887
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.887
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.887
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.887
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.887
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.887
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.885
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.876
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.876
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.876
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.876
Bo4g071620 Brassica oleracea Bo4g071620 I 0.876
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.876
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.866
27494.m000045 Ricinus communis 27494.m000045 I 0.866
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.866
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.866
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.856
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.856
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.856
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.845
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.835
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.835
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.833
ARF10 Oryza indica BGIOSGA016767 I 0.825
OBART04G18910 Oryza barthii OBART04G18910 I 0.825
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.825
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.825
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.825
OS04G0519700 Oryza sativa OS04G0519700 I 0.825
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.825
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.825
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.823
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.823
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.823
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.814
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.814
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.797
PK13393.1 Cannabis sativa PK13393.1 I 0.794
Si009541m.g Setaria italica Si009541m.g I 0.794
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.793
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.786
Ca_08488 Cicer arietinum Ca_08488 I 0.784
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.773
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.773
OB04G25990 Oryza brachyantha OB04G25990 I 0.763
OBART02G24860 Oryza barthii OBART02G24860 I 0.760
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.753
Cla022413 Citrullus lanatus Cla022413 I 0.742
Pm019126 Prunus mume Pm019126 I 0.742
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.742
TCM_035002 Theobroma cacao TCM_035002 I 0.742
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.732
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.732
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.732
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.732
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.732
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.732
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.732
PK10136.1 Cannabis sativa PK10136.1 I 0.732
MDP0000256621 Malus domestica MDP0000256621 I 0.732
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.724
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.722
OB09G15010 Oryza brachyantha OB09G15010 N 0.722
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.722
Ca_17624 Cicer arietinum Ca_17624 I 0.722
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.722
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.722
GSMUA_Achr5G18540_001 Musa acuminata GSMUA_Achr5G18540_001 I 0.720
29908.m005953 Ricinus communis 29908.m005953 I 0.711
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.711
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.711
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.711
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.711
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.711
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.701
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.701
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.701
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.701
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.701
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.700