Pavir.J38128 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.J38128 T024001_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF3
M00852_2.00 		Arabidopsis thaliana
NKGTYBNN
NNVRACMN		 PBM
Franco-Zorrilla et al.(2014)
ETTIN 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J38128.1.p B3 114 216

Links

Other B3 family TFs
Other Panicum virgatum TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb09g025500 Sorghum bicolor Sb09g025500 I 0.969
GRMZM2G441325 Zea mays GRMZM2G441325 I 0.958
Si021589m.g Setaria italica Si021589m.g I 0.958
Pavir.J17623 Panicum virgatum Pavir.J17623 I 0.958
Pavir.Eb03157 Panicum virgatum Pavir.Eb03157 I 0.917
Pavir.J17853 Panicum virgatum Pavir.J17853 I 0.917
GRMZM2G056120 Zea mays GRMZM2G056120 I 0.906
GRMZM5G874163 Zea mays GRMZM5G874163 I 0.906
Sb03g034850 Sorghum bicolor Sb03g034850 I 0.906
Si000545m.g Setaria italica Si000545m.g I 0.896
GSMUA_Achr10G26140_001 Musa acuminata GSMUA_Achr10G26140_001 I 0.875
OB05G33320 Oryza brachyantha OB05G33320 I 0.875
Traes_1AL_B14FE48AF Triticum aestivum Traes_1AL_B14FE48AF I 0.865
Traes_1DL_92BCA55C0 Triticum aestivum Traes_1DL_92BCA55C0 I 0.865
OMERI01G28330 Oryza meridionalis OMERI01G28330 I 0.865
MLOC_38232 Hordeum vulgare MLOC_38232 I 0.865
ARF3 Oryza sativa OS01G0753500 I 0.865
ORUFI01G34340 Oryza rufipogon ORUFI01G34340 I 0.865
OBART01G31160 Oryza barthii OBART01G31160 I 0.865
OGLUM01G35360 Oryza glumaepatula OGLUM01G35360 I 0.865
ONIVA01G35630 Oryza nivara ONIVA01G35630 I 0.865
OLONG_019459 Oryza longistaminata OLONG_019459 I 0.865
TRIUR3_14814 Triticum urartu TRIUR3_14814 I 0.865
BGIOSGA000812 Oryza indica BGIOSGA000812 I 0.865
Cucsa.052860 Cucumis sativus Cucsa.052860 I 0.854
Bra021885 Brassica rapa Bra021885 I 0.854
TCM_029792 Theobroma cacao TCM_029792 I 0.849
MLOC_66439 Hordeum vulgare MLOC_66439 I 0.847
OB01G40150 Oryza brachyantha OB01G40150 I 0.847
BRADI2G19867 Brachypodium distachyon BRADI2G19867 I 0.847
TRIUR3_35254 Triticum urartu TRIUR3_35254 I 0.847
Traes_3DL_734F1498E Triticum aestivum Traes_3DL_734F1498E I 0.847
Traes_3AL_A30A3C355 Triticum aestivum Traes_3AL_A30A3C355 I 0.847
F775_02482 Aegilops tauschii F775_02482 I 0.847
OGLUM01G29850 Oryza glumaepatula OGLUM01G29850 I 0.845
LPERR01G22260 Leersia perrieri LPERR01G22260 I 0.845
OMERI01G23690 Oryza meridionalis OMERI01G23690 I 0.845
OLONG_023172 Oryza longistaminata OLONG_023172 I 0.845
OBART01G26040 Oryza barthii OBART01G26040 I 0.845
ORUFI01G28960 Oryza rufipogon ORUFI01G28960 I 0.845
ONIVA01G29290 Oryza nivara ONIVA01G29290 I 0.845
ORGLA01G0213000 Oryza glaberrima ORGLA01G0213000 I 0.845
BGIOSGA001046 Oryza indica BGIOSGA001046 I 0.845
OPUNC01G25930 Oryza punctata OPUNC01G25930 I 0.845
OS01G0670800 Oryza sativa OS01G0670800 I 0.845
Cla000568 Citrullus lanatus Cla000568 I 0.844
evm.TU.supercontig_7.3 Carica papaya evm.TU.supercontig_7.3 I 0.844
Bostr.23794s0705 Boechera stricta Bostr.23794s0705 I 0.837
OPUNC01G30260 Oryza punctata OPUNC01G30260 I 0.837
Carubv10025185m.g Capsella rubella Carubv10025185m.g I 0.837
Thhalv10016394m.g Eutrema salsugineum Thhalv10016394m.g I 0.837
Cagra.1195s0014 Capsella grandiflora Cagra.1195s0014 I 0.837
ETT Arabidopsis lyrata scaffold_401977.1 I 0.837
LPERR01G26810 Leersia perrieri LPERR01G26810 I 0.837
ARF3 Arabidopsis thaliana AT2G33860 D 0.837
Bo4g182310 Brassica oleracea Bo4g182310 I 0.837
Bo4g041340 Brassica oleracea Bo4g041340 I 0.837
BRADI2G50120 Brachypodium distachyon BRADI2G50120 I 0.837
Bra005465 Brassica rapa Bra005465 I 0.837
GSMUA_Achr4G10590_001 Musa acuminata GSMUA_Achr4G10590_001 I 0.835
GLYMA15G08540 Glycine max GLYMA15G08540 I 0.833
OPUNC05G20300 Oryza punctata OPUNC05G20300 I 0.833
PRUPE_ppa002065m1g Prunus persica PRUPE_ppa002065m1g I 0.833
GLYMA07G32300 Glycine max GLYMA07G32300 I 0.833
GLYMA13G24240 Glycine max GLYMA13G24240 I 0.833
Pm031349 Prunus mume Pm031349 I 0.833
PK18282.1 Cannabis sativa PK18282.1 I 0.833
PDK_20s1663351g001 Phoenix dactylifera PDK_20s1663351g001 I 0.833
OB01G35190 Oryza brachyantha OB01G35190 I 0.833
BRADI2G46190 Brachypodium distachyon BRADI2G46190 I 0.827
Lus10013942.g Linum usitatissimum Lus10013942.g I 0.827
OBART05G22670 Oryza barthii OBART05G22670 I 0.827
ORGLA05G0198900 Oryza glaberrima ORGLA05G0198900 I 0.827
Sb09g028450 Sorghum bicolor Sb09g028450 I 0.827
MTR_2g014770 Medicago truncatula MTR_2g014770 I 0.827
Lus10005264.g Linum usitatissimum Lus10005264.g I 0.827
gene29771-v1.0-hybrid Fragaria vesca gene29771-v1.0-hybrid I 0.827
LPERR05G21420 Leersia perrieri LPERR05G21420 I 0.827
OB05G30280 Oryza brachyantha OB05G30280 I 0.827
OGLUM05G23980 Oryza glumaepatula OGLUM05G23980 I 0.827
Si021595m.g Setaria italica Si021595m.g I 0.827
OPUNC05G23400 Oryza punctata OPUNC05G23400 I 0.827
ORGLA05G0222700 Oryza glaberrima ORGLA05G0222700 I 0.827
BGIOSGA020357 Oryza indica BGIOSGA020357 I 0.827
ONIVA05G27700 Oryza nivara ONIVA05G27700 I 0.827
ONIVA05G23630 Oryza nivara ONIVA05G23630 I 0.827
Pavir.J08401 Panicum virgatum Pavir.J08401 I 0.827
PDK_20s1465161g002 Phoenix dactylifera PDK_20s1465161g002 I 0.827
OPUNC05G23380 Oryza punctata OPUNC05G23380 I 0.827
OBART05G25790 Oryza barthii OBART05G25790 I 0.827
OGLUM05G27420 Oryza glumaepatula OGLUM05G27420 I 0.827
OMERI05G20390 Oryza meridionalis OMERI05G20390 I 0.827
Si004598m.g Setaria italica Si004598m.g I 0.825
TRIUR3_24520 Triticum urartu TRIUR3_24520 I 0.825
Traes_3AL_561A00448 Triticum aestivum Traes_3AL_561A00448 I 0.825
cassava1599.valid.m1 Manihot esculenta cassava1599.valid.m1 I 0.823
Pavir.Eb02716 Panicum virgatum Pavir.Eb02716 I 0.823
BRADI2G16610 Brachypodium distachyon BRADI2G16610 I 0.816
ETT Vitis vinifera VIT_10s0003g00420 I 0.816
Ciclev10014391m.g Citrus clementina Ciclev10014391m.g I 0.816
SapurV1A.0012s0780 Salix purpurea SapurV1A.0012s0780 I 0.816
TRIUR3_33948 Triticum urartu TRIUR3_33948 I 0.816
SapurV1A.0032s0660 Salix purpurea SapurV1A.0032s0660 I 0.816
Ca_06352 Cicer arietinum Ca_06352 I 0.816
POPTR_0004s04970 Populus trichocarpa POPTR_0004s04970 I 0.816
ORUFI05G24090 Oryza rufipogon ORUFI05G24090 I 0.816
ORUFI05G27690 Oryza rufipogon ORUFI05G27690 I 0.816
GLYMA13G30750 Glycine max GLYMA13G30750 I 0.816
OS05G0515400 Oryza sativa OS05G0515400 I 0.816
GRMZM2G030710 Zea mays GRMZM2G030710 I 0.816
MDP0000173151 Malus domestica MDP0000173151 I 0.816
Pavir.Ca00928 Panicum virgatum Pavir.Ca00928 I 0.816
orange1.1g004106m.g Citrus sinensis orange1.1g004106m.g I 0.816
MDP0000179650 Malus domestica MDP0000179650 I 0.816
Gorai.011G030900 Gossypium raimondii Gorai.011G030900 I 0.816
ARF15 Oryza sativa OS05G0563400 I 0.816
Sb03g030740 Sorghum bicolor Sb03g030740 I 0.816
Gorai.010G157400 Gossypium raimondii Gorai.010G157400 I 0.816
POPTR_0011s05830 Populus trichocarpa POPTR_0011s05830 I 0.816
Pavir.J35323 Panicum virgatum Pavir.J35323 I 0.814
Eucgr.D00588 Eucalyptus grandis Eucgr.D00588 I 0.812
GSMUA_Achr7G11000_001 Musa acuminata GSMUA_Achr7G11000_001 I 0.812
gene28545-v1.0-hybrid Fragaria vesca gene28545-v1.0-hybrid I 0.812
PRUPE_ppa001557mg Prunus persica PRUPE_ppa001557mg I 0.812
Pm000994 Prunus mume Pm000994 I 0.812
Aquca_051_00062 Aquilegia coerulea Aquca_051_00062 I 0.812
29900.m001540 Ricinus communis 29900.m001540 I 0.806
mgf016063m Mimulus guttatus mgf016063m I 0.806
Gorai.009G166100 Gossypium raimondii Gorai.009G166100 I 0.806
TRAES3BF097400050CFD_g Triticum aestivum TRAES3BF097400050CFD_g I 0.806
GSMUA_Achr7G25330_001 Musa acuminata GSMUA_Achr7G25330_001 I 0.806
LjSGA_059669.1 Lotus japonicus LjSGA_059669.1 I 0.806
GSMUA_Achr3G31350_001 Musa acuminata GSMUA_Achr3G31350_001 I 0.806
LjSGA_103336.1 Lotus japonicus LjSGA_103336.1 I 0.806
LPERR05G18660 Leersia perrieri LPERR05G18660 I 0.806
MTR_4g088210 Medicago truncatula MTR_4g088210 I 0.806
Ciclev10027839m.g Citrus clementina Ciclev10027839m.g I 0.802
PK07904.1 Cannabis sativa PK07904.1 I 0.802
orange1.1g003580m.g Citrus sinensis orange1.1g003580m.g I 0.802
PGSC0003DMG400031769 Solanum tuberosum PGSC0003DMG400031769 I 0.798
Solyc02g077560.2 Solanum lycopersicum Solyc02g077560.2 I 0.798
cassava830.valid.m1 Manihot esculenta cassava830.valid.m1 I 0.796
GRMZM2G437460 Zea mays GRMZM2G437460 I 0.796
Cla009812 Citrullus lanatus Cla009812 I 0.796
Cucsa.046570 Cucumis sativus Cucsa.046570 I 0.796
30111.m000734 Ricinus communis 30111.m000734 I 0.796
Solyc12g006350.1 Solanum lycopersicum Solyc12g006350.1 I 0.792
MDP0000412781 Malus domestica MDP0000412781 I 0.786
Gorai.006G120400 Gossypium raimondii Gorai.006G120400 I 0.786
MDP0000225980 Malus domestica MDP0000225980 I 0.786
Eucgr.B02480 Eucalyptus grandis Eucgr.B02480 I 0.786
ARF4 Vitis vinifera VIT_06s0004g03130 I 0.786
TCM_041071 Theobroma cacao TCM_041071 I 0.786
Aquca_036_00025 Aquilegia coerulea Aquca_036_00025 I 0.786
MTR_4g060460 Medicago truncatula MTR_4g060460 I 0.784
Ca_14590 Cicer arietinum Ca_14590 I 0.784
GSMUA_Achr4G02750_001 Musa acuminata GSMUA_Achr4G02750_001 I 0.784
SELMODRAFT_437944 Selaginella moellendorffii SELMODRAFT_437944 I 0.781
orange1.1g012439m.g Citrus sinensis orange1.1g012439m.g I 0.781
ARF4 Arabidopsis thaliana AT5G60450 I 0.781
SELMODRAFT_438973 Selaginella moellendorffii SELMODRAFT_438973 I 0.781
Traes_3DL_5C378695E Triticum aestivum Traes_3DL_5C378695E I 0.778
AMTR_s00021p00200760 Amborella trichopoda AMTR_s00021p00200760 I 0.776
evm.TU.supercontig_139.80 Carica papaya evm.TU.supercontig_139.80 I 0.776
POPTR_0009s01700 Populus trichocarpa POPTR_0009s01700 I 0.776
cassava6009.valid.m1 Manihot esculenta cassava6009.valid.m1 I 0.776
AMTR_s00034p00110140 Amborella trichopoda AMTR_s00034p00110140 I 0.776
Aquca_027_00067 Aquilegia coerulea Aquca_027_00067 I 0.776
SapurV1A.0240s0100 Salix purpurea SapurV1A.0240s0100 I 0.776
PGSC0003DMG400008065 Solanum tuberosum PGSC0003DMG400008065 I 0.776
GLYMA12G07560 Glycine max GLYMA12G07560 I 0.776
Bostr.26833s0196 Boechera stricta Bostr.26833s0196 I 0.768
Cagra.2519s0017 Capsella grandiflora Cagra.2519s0017 I 0.768
Carubv10025912m.g Capsella rubella Carubv10025912m.g I 0.768
chr3.CM0111.110.nd Lotus japonicus chr3.CM0111.110.nd I 0.765
Solyc11g069190.1 Solanum lycopersicum Solyc11g069190.1 I 0.765
Ciclev10000976m.g Citrus clementina Ciclev10000976m.g I 0.765
MTR_2g093740 Medicago truncatula MTR_2g093740 I 0.765
GLYMA11G15910 Glycine max GLYMA11G15910 I 0.765
GLYMA12G29280 Glycine max GLYMA12G29280 I 0.765
Bo2g024860 Brassica oleracea Bo2g024860 I 0.758
Thhalv10012728m.g Eutrema salsugineum Thhalv10012728m.g I 0.758
Solyc12g006340.1 Solanum lycopersicum Solyc12g006340.1 I 0.750
SELMODRAFT_430287 Selaginella moellendorffii SELMODRAFT_430287 I 0.750
Thhalv10012074m.g Eutrema salsugineum Thhalv10012074m.g I 0.750
Cucsa.117420 Cucumis sativus Cucsa.117420 I 0.750
Bo9g143570 Brassica oleracea Bo9g143570 I 0.747
Bra002479 Brassica rapa Bra002479 I 0.747
ARF4 Arabidopsis lyrata fgenesh2_kg.8__2008__AT5G60450.1 I 0.747
mgf011102m Mimulus guttatus mgf011102m I 0.745
Gorai.009G078800 Gossypium raimondii Gorai.009G078800 I 0.745
F775_20129 Aegilops tauschii F775_20129 I 0.742
SELMODRAFT_166729 Selaginella moellendorffii SELMODRAFT_166729 I 0.740
estExt_Genewise1.C_2800001 Physcomitrella patens estExt_Genewise1.C_2800001 I 0.732
gw1.341.65.1 Physcomitrella patens gw1.341.65.1 I 0.732
estExt_Genewise1.C_140304 Physcomitrella patens estExt_Genewise1.C_140304 I 0.732
GRMZM2G137413 Zea mays GRMZM2G137413 I 0.726
Pavir.Ab01961 Panicum virgatum Pavir.Ab01961 I 0.726
Si016562m.g Setaria italica Si016562m.g I 0.726
e_gw1.64.107.1 Physcomitrella patens e_gw1.64.107.1 I 0.722
VIT_03s0167g00010 Vitis vinifera VIT_03s0167g00010 I 0.719
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.719
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.719
GLYMA13G40310 Glycine max GLYMA13G40310 I 0.717
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.717
OB02G28170 Oryza brachyantha OB02G28170 I 0.716
LjSGA_022975.2 Lotus japonicus LjSGA_022975.2 I 0.712
SapurV1A.4298s0010 Salix purpurea SapurV1A.4298s0010 I 0.709
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.708
GSMUA_Achr10G16170_001 Musa acuminata GSMUA_Achr10G16170_001 I 0.705
GSMUA_Achr6G29070_001 Musa acuminata GSMUA_Achr6G29070_001 I 0.705
chr2.CM0201.60.nd Lotus japonicus chr2.CM0201.60.nd I 0.703
GSMUA_Achr5G26580_001 Musa acuminata GSMUA_Achr5G26580_001 I 0.701
ORUFI06G26570 Oryza rufipogon ORUFI06G26570 I 0.700