Thhalv10009849m.g (Eutrema salsugineum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Thhalv10009849m.g T024231_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LEC2
M01695_2.00 		Arabidopsis thaliana
MTGCATGC
GCATGCAK		 PBM
Weirauch et al.(2014)
pTH8181 		0.786 0.786
LEC2
M02653_2.00 		Arabidopsis thaliana
NDDYGCATGNN
NNCATGCRHHN		 SELEX
Mathelier et al.(2014)
MA0581.1 		0.786 0.786
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10009849m B3 173 274

Links

Other B3 family TFs
Other Eutrema salsugineum TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.15697s0149 Boechera stricta Bostr.15697s0149 I 0.908
Bo7g048240 Brassica oleracea Bo7g048240 I 0.898
Bo5g055730 Brassica oleracea Bo5g055730 I 0.847
Cagra.1822s0032 Capsella grandiflora Cagra.1822s0032 I 0.814
Carubv10010882m.g Capsella rubella Carubv10010882m.g I 0.814
LEC2 Arabidopsis lyrata fgenesh2_kg.1__2994__AT1G28300.1 I 0.806
LEC2 Arabidopsis thaliana AT1G28300 D 0.794
Bra030087 Brassica rapa Bra030087 N 0.792
Bra032890 Brassica rapa Bra032890 N 0.792
SapurV1A.0032s0310 Salix purpurea SapurV1A.0032s0310 N 0.755
Gorai.006G087600 Gossypium raimondii Gorai.006G087600 I 0.755
POPTR_0011s05380 Populus trichocarpa POPTR_0011s05380 I 0.742
TCM_029838 Theobroma cacao TCM_029838 N 0.724
cassava45597.m1 Manihot esculenta cassava45597.m1 N 0.719
Gorai.009G168500 Gossypium raimondii Gorai.009G168500 I 0.714