Thhalv10016329m.g (Eutrema salsugineum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Thhalv10016329m.g T024253_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.885 0.885
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10016329m B3 115 217

Links

Other B3 family TFs
Other Eutrema salsugineum TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARF16 Arabidopsis thaliana AT4G30080 D 0.876
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.876
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.897
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.897
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.897
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.918
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.732
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.897
30078.m002329 Ricinus communis 30078.m002329 I 0.887
29908.m005953 Ricinus communis 29908.m005953 I 0.732
27538.m000327 Ricinus communis 27538.m000327 I 0.927
27494.m000045 Ricinus communis 27494.m000045 I 0.875
Pm031275 Prunus mume Pm031275 I 0.918
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.875
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.701
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.887
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 1.000
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.876
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.876
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 1.000
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.918
mgf024607m Mimulus guttatus mgf024607m I 0.866
mgf016139m Mimulus guttatus mgf016139m I 0.938
mgf005300m Mimulus guttatus mgf005300m I 0.876
mgf000336m Mimulus guttatus mgf000336m I 0.865
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.854
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.835
Pm030120 Prunus mume Pm030120 I 0.897
Pm018533 Prunus mume Pm018533 I 0.897
Cla022413 Citrullus lanatus Cla022413 I 0.711
TCM_042067 Theobroma cacao TCM_042067 I 0.928
TCM_035002 Theobroma cacao TCM_035002 I 0.711
TCM_029792 Theobroma cacao TCM_029792 I 0.717
TCM_022163 Theobroma cacao TCM_022163 I 0.887
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.897
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.763
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.897
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.755
Si034525m.g Setaria italica Si034525m.g I 0.897
Si016509m.g Setaria italica Si016509m.g I 0.896
Si009541m.g Setaria italica Si009541m.g I 0.753
TCM_043157 Theobroma cacao TCM_043157 I 0.906
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.833
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.833
Cla018574 Citrullus lanatus Cla018574 I 0.897
Cla013979 Citrullus lanatus Cla013979 I 0.856
Cla008883 Citrullus lanatus Cla008883 I 0.887
Ca_26121 Cicer arietinum Ca_26121 I 0.887
Ca_17624 Cicer arietinum Ca_17624 I 0.711
Ca_17136 Cicer arietinum Ca_17136 I 0.876
Ca_08488 Cicer arietinum Ca_08488 I 0.835
Ca_02541 Cicer arietinum Ca_02541 I 0.927
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.875
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.907
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.918
Si005991m.g Setaria italica Si005991m.g I 0.887
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.895
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.866
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I 0.708
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.711
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.887
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.823
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.874
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.823
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.876
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.897
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.897
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.876
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.885
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.918
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.729
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.812
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.907
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.701
PK17007.1 Cannabis sativa PK17007.1 I 0.897
PK13393.1 Cannabis sativa PK13393.1 I 0.786
PK13064.1 Cannabis sativa PK13064.1 I 0.887
PK10136.1 Cannabis sativa PK10136.1 I 0.708
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.876
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.856
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.907
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.907
MDP0000750392 Malus domestica MDP0000750392 I 0.876
MDP0000221322 Malus domestica MDP0000221322 I 0.918
MDP0000131481 Malus domestica MDP0000131481 I 0.918
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.938
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.897
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.948
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.876
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.719
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.876
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.928
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.887
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.897
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.876
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.897
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.854
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.906
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.887
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.835
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.897
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.835
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.896
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.897
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.885
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.825
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.866
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.854
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.708
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.896
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 1.000
OBART04G18910 Oryza barthii OBART04G18910 I 0.792
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.887
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.845
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.825
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.885
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.719
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.887
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.917
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.907
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.833
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.876
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.887
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.897
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.885
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.750
OBART02G24860 Oryza barthii OBART02G24860 I 0.747
OB10G20590 Oryza brachyantha OB10G20590 I 0.896
OB06G32920 Oryza brachyantha OB06G32920 I 0.887
OB04G25990 Oryza brachyantha OB04G25990 I 0.760
OB02G32150 Oryza brachyantha OB02G32150 I 0.875
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.750
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.729
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.896
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.917
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.887
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.887
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.906
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.885
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.865
Bra011955 Brassica rapa Bra011955 I 0.990
Bra011162 Brassica rapa Bra011162 I 0.887
Bo7g114200 Brassica oleracea Bo7g114200 I 0.896
Bo4g071620 Brassica oleracea Bo4g071620 I 0.979
Bo1g014600 Brassica oleracea Bo1g014600 I 0.876
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.876
ARF10 Oryza indica BGIOSGA016767 I 0.792
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.885
ARF10 Arabidopsis thaliana AT2G28350 I 0.990
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.854
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.806
Bra024109 Brassica rapa Bra024109 I 0.876
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.876
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.897
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.907
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.887
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.918
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.907
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.907
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.887
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.876
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 1.000
F775_32978 Aegilops tauschii F775_32978 I 0.896
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.710
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.875
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.887
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.825
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.918
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.866
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.729
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.907
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.711
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.765
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.897
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.917
ARF22 Oryza sativa OS10G0479900 I 0.876
ARF18 Oryza sativa OS06G0685700 I 0.887
OS04G0519700 Oryza sativa OS04G0519700 I 0.792
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.918
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.866
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.907
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.854
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.854
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.825
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.876
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.887
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.906
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.897
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.701
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.897
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.897
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.917
ARF8 Oryza sativa OS02G0628600 I 0.885
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.876
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.887
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.876
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.887
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.792
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.885
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.854
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.875
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.876
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.887
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.885
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.792
OBART10G13410 Oryza barthii OBART10G13410 I 0.876
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.885
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.887
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.792
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.750
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.885
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.876
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.887
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.792
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.885
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.876
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.887
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.784
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.885
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.876
OBART06G25230 Oryza barthii OBART06G25230 I 0.887