CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chr2.CM0308.470.nd
(
Lotus japonicus
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
chr2.CM0308.470.nd
T024388_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VRN1
M06704_2.00
Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW
Dap-seq
OMalley et al.(2016)
VRN1_col_a
0.704
0.704
VRN1
M06705_2.00
Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN
Dap-seq
OMalley et al.(2016)
VRN1_colamp_a
0.704
0.704
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr2.CM0308.470.nd
B3
6
98
FHKLVLPSTLQSKQLRVPDNFLRKYGGQLSTIATLTVPDGNVWRVGLKKADNRIWFVDGWQEFVQRYTIGVGYFLVFLYEGNSSFIVHIFNMS
chr2.CM0308.470.nd
B3
286
381
CRVVLRPSYLYRGCIMYLPSCFAEMNLNGVSGFIKLQVADGRQWPVRCLYRGGRAKLSQGWFDFTLENNLGEGDVCVFELLRTRDVVLQVTLFRLS
Links
Other
B3
family TFs
Other
Lotus japonicus
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy