chr4.CM0006.290.nc (Lotus japonicus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 chr4.CM0006.290.nc T024398_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN

NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.835 0.835
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN

NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.784 0.784
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0006.290.nc B3 126 228

Links

Other B3 family TFs
Other Lotus japonicus TFs

550 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27996.m000153 Ricinus communis 27996.m000153 N 0.000
Al_scaffold_0004_1965 Arabidopsis lyrata Al_scaffold_0004_1965 N 0.000
AMTR_s00011p00235740 Amborella trichopoda AMTR_s00011p00235740 N 0.000
BHLH52 Arabidopsis thaliana AT1G30670 N 0.000
BHLH53 Arabidopsis thaliana AT2G34820 N 0.000
Bo3g028090 Brassica oleracea Bo3g028090 N 0.000
Bo4g039270 Brassica oleracea Bo4g039270 N 0.000
Bostr.15697s0367 Boechera stricta Bostr.15697s0367 N 0.000
Bostr.23794s0621 Boechera stricta Bostr.23794s0621 N 0.000
Bra005389 Brassica rapa Bra005389 N 0.000
Bra022993 Brassica rapa Bra022993 N 0.000
Cagra.1508s0136 Capsella grandiflora Cagra.1508s0136 N 0.000
Carubv10011063m.g Capsella rubella Carubv10011063m.g N 0.000
cassava27522.m1 Manihot esculenta cassava27522.m1 N 0.000
cassava8426.m1 Manihot esculenta cassava8426.m1 N 0.000
Ca_13608 Cicer arietinum Ca_13608 N 0.000
Ciclev10017579m.g Citrus clementina Ciclev10017579m.g N 0.000
Cla020055 Citrullus lanatus Cla020055 N 0.000
Cucsa.167440 Cucumis sativus Cucsa.167440 N 0.000
Eucgr.D01630 Eucalyptus grandis Eucgr.D01630 N 0.000
evm.TU.supercontig_489.5 Carica papaya evm.TU.supercontig_489.5 N 0.000
evm.TU.supercontig_489.6 Carica papaya evm.TU.supercontig_489.6 N 0.000
fgenesh1_pm.C_scaffold_1002485 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002485 N 0.000
gene18542-v1.0-hybrid Fragaria vesca gene18542-v1.0-hybrid N 0.000
GLYMA08G17747 Glycine max GLYMA08G17747 N 0.000
GLYMA15G41400 Glycine max GLYMA15G41400 N 0.000
Gorai.002G107000 Gossypium raimondii Gorai.002G107000 N 0.000
Gorai.005G218900 Gossypium raimondii Gorai.005G218900 N 0.000
GSMUA_Achr11G16900_001 Musa acuminata GSMUA_Achr11G16900_001 N 0.000
GSMUA_AchrUn_randomG20690_001 Musa acuminata GSMUA_AchrUn_randomG20690_001 N 0.000
Lus10005451.g Linum usitatissimum Lus10005451.g N 0.000
Lus10038432.g Linum usitatissimum Lus10038432.g N 0.000
MDP0000209483 Malus domestica MDP0000209483 N 0.000
MDP0000216053 Malus domestica MDP0000216053 N 0.000
MDP0000280921 Malus domestica MDP0000280921 N 0.000
mgf020354m Mimulus guttatus mgf020354m N 0.000
MTR_1g060700 Medicago truncatula MTR_1g060700 N 0.000
MTR_2g067000 Medicago truncatula MTR_2g067000 N 0.000
orange1.1g041370m.g Citrus sinensis orange1.1g041370m.g N 0.000
PGSC0003DMG400020812 Solanum tuberosum PGSC0003DMG400020812 N 0.000
PGSC0003DMG400044874 Solanum tuberosum PGSC0003DMG400044874 N 0.000
Pm010610 Prunus mume Pm010610 N 0.000
POPTR_0001s46530 Populus trichocarpa POPTR_0001s46530 N 0.000
POPTR_0011s16100 Populus trichocarpa POPTR_0011s16100 N 0.000
PRUPE_ppa017597mg Prunus persica PRUPE_ppa017597mg N 0.000
PRUPE_ppa025945mg Prunus persica PRUPE_ppa025945mg N 0.000
SapurV1A.0527s0040 Salix purpurea SapurV1A.0527s0040 N 0.000
SapurV1A.0602s0120 Salix purpurea SapurV1A.0602s0120 N 0.000
Si038598m.g Setaria italica Si038598m.g N 0.000
Solyc08g075090.2 Solanum lycopersicum Solyc08g075090.2 N 0.000
Solyc08g075110.1 Solanum lycopersicum Solyc08g075110.1 N 0.000
TCM_027032 Theobroma cacao TCM_027032 N 0.000
TCM_033386 Theobroma cacao TCM_033386 N 0.000
Thhalv10009765m.g Eutrema salsugineum Thhalv10009765m.g N 0.000
Thhalv10017751m.g Eutrema salsugineum Thhalv10017751m.g N 0.000
VIT_10s0092g00030 Vitis vinifera VIT_10s0092g00030 N 0.000