CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PDK_20s1477241g001
(
Phoenix dactylifera
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
PDK_20s1477241g001
T024472_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF2
M06714_2.00
Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN
Dap-seq
OMalley et al.(2016)
ARF2_col_v31
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1477241g001
B3
1
72
MSQPTPTQELVATDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRAESGELRVGARRLA
Links
Other
B3
family TFs
Other
Phoenix dactylifera
TFs
263 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_21948
Cicer arietinum
Ca_21948
I
0.889
MTR_4g021580
Medicago truncatula
MTR_4g021580
I
0.889
GLYMA03G17450
Glycine max
GLYMA03G17450
I
0.875
Solyc01g096070.2
Solanum lycopersicum
Solyc01g096070.2
I
0.875
GLYMA01G25270
Glycine max
GLYMA01G25270
I
0.875
TCM_005126
Theobroma cacao
TCM_005126
I
0.875
Cagra.0483s0062
Capsella grandiflora
Cagra.0483s0062
I
0.875
VIT_15s0046g00290
Vitis vinifera
VIT_15s0046g00290
I
0.875
Bostr.25993s0113
Boechera stricta
Bostr.25993s0113
I
0.875
ARF11
Arabidopsis thaliana
AT2G46530
I
0.875
30068.m002516
Ricinus communis
30068.m002516
I
0.875
Carubv10018954m.g
Capsella rubella
Carubv10018954m.g
I
0.875
Thhalv10001365m.g
Eutrema salsugineum
Thhalv10001365m.g
I
0.861
Gorai.003G078000
Gossypium raimondii
Gorai.003G078000
I
0.861
cassava45426.m1
Manihot esculenta
cassava45426.m1
I
0.861
cassava42787.valid.m1
Manihot esculenta
cassava42787.valid.m1
I
0.861
cassava45425.m1
Manihot esculenta
cassava45425.m1
I
0.861
POPTR_0001s10900
Populus trichocarpa
POPTR_0001s10900
I
0.861
Gorai.001G153900
Gossypium raimondii
Gorai.001G153900
I
0.861
POPTR_0002s17350
Populus trichocarpa
POPTR_0002s17350
I
0.861
ARF11
Arabidopsis lyrata
scaffold_403621.1
I
0.861
PGSC0003DMG400000118
Solanum tuberosum
PGSC0003DMG400000118
I
0.861
SapurV1A.0035s0230
Salix purpurea
SapurV1A.0035s0230
I
0.861
ARF18
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5002633
I
0.861
PK02218.1
Cannabis sativa
PK02218.1
I
0.861
Cucsa.114840
Cucumis sativus
Cucsa.114840
I
0.861
ARF18
Arabidopsis thaliana
AT3G61830
I
0.861
cassava45422.m1
Manihot esculenta
cassava45422.m1
I
0.861
Bo01141s010
Brassica oleracea
Bo01141s010
I
0.861
LjSGA_059323.1
Lotus japonicus
LjSGA_059323.1
I
0.861
cassava42789.valid.m1
Manihot esculenta
cassava42789.valid.m1
I
0.861
cassava42790.valid.m1
Manihot esculenta
cassava42790.valid.m1
I
0.861
Bo3g039330
Brassica oleracea
Bo3g039330
I
0.861
cassava42788.valid.m1
Manihot esculenta
cassava42788.valid.m1
I
0.861
cassava45424.m1
Manihot esculenta
cassava45424.m1
I
0.861
Bo8g097320
Brassica oleracea
Bo8g097320
I
0.861
Bra014419
Brassica rapa
Bra014419
I
0.861
cassava45423.m1
Manihot esculenta
cassava45423.m1
I
0.861
POPTR_0003s14200
Populus trichocarpa
POPTR_0003s14200
I
0.847
GLYMA16G02650
Glycine max
GLYMA16G02650
I
0.847
cassava43609.valid.m1
Manihot esculenta
cassava43609.valid.m1
I
0.847
SapurV1A.0003s1010
Salix purpurea
SapurV1A.0003s1010
I
0.847
VIT_02s0025g01740
Vitis vinifera
VIT_02s0025g01740
I
0.847
evm.TU.supercontig_96.40
Carica papaya
evm.TU.supercontig_96.40
I
0.847
Bra004530
Brassica rapa
Bra004530
I
0.847
Cla013021
Citrullus lanatus
Cla013021
I
0.847
GLYMA07G06060
Glycine max
GLYMA07G06060
I
0.847
Bo4g008150
Brassica oleracea
Bo4g008150
I
0.847
Lus10032413.g
Linum usitatissimum
Lus10032413.g
I
0.833
MDP0000194603
Malus domestica
MDP0000194603
I
0.833
Lus10023058.g
Linum usitatissimum
Lus10023058.g
I
0.833
cassava29828.valid.m1
Manihot esculenta
cassava29828.valid.m1
I
0.833
Eucgr.D01764
Eucalyptus grandis
Eucgr.D01764
I
0.833
MDP0000139073
Malus domestica
MDP0000139073
I
0.833
POPTR_0014s09560
Populus trichocarpa
POPTR_0014s09560
I
0.833
Pm018352
Prunus mume
Pm018352
I
0.833
TCM_016500
Theobroma cacao
TCM_016500
I
0.833
Cucsa.078800
Cucumis sativus
Cucsa.078800
I
0.833
Aquca_013_00067
Aquilegia coerulea
Aquca_013_00067
I
0.833
Bostr.13158s0186
Boechera stricta
Bostr.13158s0186
I
0.833
PRUPE_ppa002230mg
Prunus persica
PRUPE_ppa002230mg
I
0.833
PRUPE_ppa002617mg
Prunus persica
PRUPE_ppa002617mg
I
0.833
Pm024149
Prunus mume
Pm024149
I
0.833
Gorai.008G126200
Gossypium raimondii
Gorai.008G126200
I
0.833
PK07332.1
Cannabis sativa
PK07332.1
I
0.833
SapurV1A.0013s0230
Salix purpurea
SapurV1A.0013s0230
I
0.833
Thhalv10005857m.g
Eutrema salsugineum
Thhalv10005857m.g
I
0.833
GLYMA07G16170
Glycine max
GLYMA07G16170
I
0.833
GLYMA03G41920
Glycine max
GLYMA03G41920
I
0.833
Carubv10022841m.g
Capsella rubella
Carubv10022841m.g
I
0.819
gene25123-v1.0-hybrid
Fragaria vesca
gene25123-v1.0-hybrid
I
0.819
Cagra.0050s0046
Capsella grandiflora
Cagra.0050s0046
I
0.819
SapurV1A.1529s0070
Salix purpurea
SapurV1A.1529s0070
I
0.819
PDK_20s1394651g001
Phoenix dactylifera
PDK_20s1394651g001
I
0.819
mgf005549m
Mimulus guttatus
mgf005549m
I
0.819
Gorai.007G026900
Gossypium raimondii
Gorai.007G026900
I
0.819
GSMUA_Achr10G15100_001
Musa acuminata
GSMUA_Achr10G15100_001
I
0.806
Ca_23296
Cicer arietinum
Ca_23296
I
0.806
GLYMA18G40180
Glycine max
GLYMA18G40180
I
0.806
Ciclev10019131m.g
Citrus clementina
Ciclev10019131m.g
I
0.806
Eucgr.E00888
Eucalyptus grandis
Eucgr.E00888
I
0.806
GSMUA_Achr7G24330_001
Musa acuminata
GSMUA_Achr7G24330_001
I
0.806
orange1.1g005491m.g
Citrus sinensis
orange1.1g005491m.g
I
0.806
MTR_7g062540
Medicago truncatula
MTR_7g062540
I
0.806
Bo1g037360
Brassica oleracea
Bo1g037360
I
0.792
POPTR_0004s23770
Populus trichocarpa
POPTR_0004s23770
I
0.792
chr1.LjT43L07.10.nd
Lotus japonicus
chr1.LjT43L07.10.nd
I
0.792
Bostr.7867s0204
Boechera stricta
Bostr.7867s0204
I
0.792
Thhalv10024554m.g
Eutrema salsugineum
Thhalv10024554m.g
I
0.792
ARF9
Arabidopsis lyrata
Al_scaffold_0007_1752
I
0.792
AMTR_s00057p00141830
Amborella trichopoda
AMTR_s00057p00141830
I
0.792
PDK_20s1585531g001
Phoenix dactylifera
PDK_20s1585531g001
I
0.792
Solyc08g008380.2
Solanum lycopersicum
Solyc08g008380.2
I
0.792
PK12669.1
Cannabis sativa
PK12669.1
I
0.792
ARF9
Arabidopsis thaliana
AT4G23980
I
0.792
SapurV1A.0422s0040
Salix purpurea
SapurV1A.0422s0040
I
0.778
LjSGA_022281.1
Lotus japonicus
LjSGA_022281.1
I
0.778
GSMUA_AchrUn_randomG11300_001
Musa acuminata
GSMUA_AchrUn_randomG11300_001
I
0.778
MTR_2g005240
Medicago truncatula
MTR_2g005240
I
0.778
GRMZM2G116557
Zea mays
GRMZM2G116557
I
0.778
F775_31280
Aegilops tauschii
F775_31280
I
0.778
GLYMA16G00220
Glycine max
GLYMA16G00220
I
0.778
Traes_3DL_1FC3735D9
Triticum aestivum
Traes_3DL_1FC3735D9
I
0.778
Bra013748
Brassica rapa
Bra013748
I
0.778
orange1.1g005368m.g
Citrus sinensis
orange1.1g005368m.g
I
0.778
Bra019255
Brassica rapa
Bra019255
I
0.778
Ciclev10019174m.g
Citrus clementina
Ciclev10019174m.g
I
0.778
Bo7g109250
Brassica oleracea
Bo7g109250
I
0.778
evm.TU.supercontig_15.1
Carica papaya
evm.TU.supercontig_15.1
I
0.778
Gorai.007G109500
Gossypium raimondii
Gorai.007G109500
I
0.778
ARF1
Vitis vinifera
VIT_12s0035g01800
I
0.778
Solyc03g118290.2
Solanum lycopersicum
Solyc03g118290.2
I
0.764
mgf006511m
Mimulus guttatus
mgf006511m
I
0.764
ARF2
Vitis vinifera
VIT_17s0000g00320
I
0.764
Cla019614
Citrullus lanatus
Cla019614
I
0.764
Cucsa.156920
Cucumis sativus
Cucsa.156920
I
0.764
chr4.CM0175.280.nc
Lotus japonicus
chr4.CM0175.280.nc
I
0.764
Traes_3DL_BC7A7E056
Triticum aestivum
Traes_3DL_BC7A7E056
I
0.764
PK16974.1
Cannabis sativa
PK16974.1
I
0.764
BRADI2G59480
Brachypodium distachyon
BRADI2G59480
I
0.764
mgf015308m
Mimulus guttatus
mgf015308m
I
0.764
TRAES3BF001100080CFD_g
Triticum aestivum
TRAES3BF001100080CFD_g
I
0.764
TCM_027113
Theobroma cacao
TCM_027113
I
0.764
F775_32662
Aegilops tauschii
F775_32662
I
0.764
POPTR_0015s11660
Populus trichocarpa
POPTR_0015s11660
I
0.764
GRMZM2G338259
Zea mays
GRMZM2G338259
I
0.764
PGSC0003DMG400012261
Solanum tuberosum
PGSC0003DMG400012261
I
0.764
MDP0000258032
Malus domestica
MDP0000258032
I
0.764
PGSC0003DMG400020711
Solanum tuberosum
PGSC0003DMG400020711
I
0.764
GSMUA_Achr9G08310_001
Musa acuminata
GSMUA_Achr9G08310_001
I
0.764
Eucgr.G00076
Eucalyptus grandis
Eucgr.G00076
I
0.764
Pavir.Ea03860
Panicum virgatum
Pavir.Ea03860
I
0.764
Gorai.001G054600
Gossypium raimondii
Gorai.001G054600
I
0.764
gene06434-v1.0-hybrid
Fragaria vesca
gene06434-v1.0-hybrid
I
0.764
Pavir.Eb03734
Panicum virgatum
Pavir.Eb03734
I
0.764
Gorai.008G210200
Gossypium raimondii
Gorai.008G210200
I
0.764
POPTR_0012s10790
Populus trichocarpa
POPTR_0012s10790
I
0.764
MTR_8g100050
Medicago truncatula
MTR_8g100050
I
0.764
GLYMA04G37760
Glycine max
GLYMA04G37760
I
0.764
Sb03g044630
Sorghum bicolor
Sb03g044630
I
0.764
MDP0000929655
Malus domestica
MDP0000929655
I
0.764
LPERR12G09930
Leersia perrieri
LPERR12G09930
I
0.764
Si000340m.g
Setaria italica
Si000340m.g
I
0.764
GLYMA06G17320
Glycine max
GLYMA06G17320
I
0.764
MLOC_68907
Hordeum vulgare
MLOC_68907
I
0.764
Aquca_008_00175
Aquilegia coerulea
Aquca_008_00175
I
0.764
Eucgr.K02197
Eucalyptus grandis
Eucgr.K02197
I
0.761
Lus10043200.g
Linum usitatissimum
Lus10043200.g
I
0.750
LjSGA_068216.1
Lotus japonicus
LjSGA_068216.1
I
0.750
MDP0000310875
Malus domestica
MDP0000310875
I
0.750
Lus10032541.g
Linum usitatissimum
Lus10032541.g
I
0.750
Ciclev10030696m.g
Citrus clementina
Ciclev10030696m.g
I
0.750
orange1.1g004792m.g
Citrus sinensis
orange1.1g004792m.g
I
0.750
Bostr.26833s0038
Boechera stricta
Bostr.26833s0038
I
0.750
SapurV1A.0672s0210
Salix purpurea
SapurV1A.0672s0210
I
0.750
SapurV1A.0774s0040
Salix purpurea
SapurV1A.0774s0040
I
0.750
SapurV1A.0517s0240
Salix purpurea
SapurV1A.0517s0240
I
0.750
Thhalv10003641m.g
Eutrema salsugineum
Thhalv10003641m.g
I
0.750
Pavir.J11622
Panicum virgatum
Pavir.J11622
I
0.750
mgf020855m
Mimulus guttatus
mgf020855m
I
0.750
Carubv10025860m.g
Capsella rubella
Carubv10025860m.g
I
0.750
Cagra.4553s0009
Capsella grandiflora
Cagra.4553s0009
I
0.750
Pavir.Cb00753
Panicum virgatum
Pavir.Cb00753
I
0.750
Solyc12g042070.1
Solanum lycopersicum
Solyc12g042070.1
I
0.750
OGLUM04G13380
Oryza glumaepatula
OGLUM04G13380
I
0.750
OGLUM11G14710
Oryza glumaepatula
OGLUM11G14710
I
0.750
cassava37256.valid.m1
Manihot esculenta
cassava37256.valid.m1
I
0.750
OGLUM01G46840
Oryza glumaepatula
OGLUM01G46840
I
0.750
OBART11G15270
Oryza barthii
OBART11G15270
I
0.750
OB11G21910
Oryza brachyantha
OB11G21910
I
0.750
OB12G20020
Oryza brachyantha
OB12G20020
I
0.750
OMERI04G12260
Oryza meridionalis
OMERI04G12260
I
0.750
OMERI11G12590
Oryza meridionalis
OMERI11G12590
I
0.750
ORGLA04G0107000
Oryza glaberrima
ORGLA04G0107000
I
0.750
ORGLA11G0129300
Oryza glaberrima
ORGLA11G0129300
I
0.750
OPUNC11G12650
Oryza punctata
OPUNC11G12650
I
0.750
OPUNC01G41560
Oryza punctata
OPUNC01G41560
I
0.750
ONIVA04G11850
Oryza nivara
ONIVA04G11850
I
0.750
ONIVA12G10760
Oryza nivara
ONIVA12G10760
I
0.750
OB04G20880
Oryza brachyantha
OB04G20880
I
0.750
LPERR11G11950
Leersia perrieri
LPERR11G11950
I
0.750
Bo3g108130
Brassica oleracea
Bo3g108130
I
0.750
Bo9g014770
Brassica oleracea
Bo9g014770
I
0.750
Bo2g161810
Brassica oleracea
Bo2g161810
I
0.750
ARF23
Oryza indica
BGIOSGA033901
I
0.750
ARF2
Arabidopsis thaliana
AT5G62000
D
0.750
BGIOSGA016467
Oryza indica
BGIOSGA016467
I
0.750
Bra010048
Brassica rapa
Bra010048
I
0.750
Bra035910
Brassica rapa
Bra035910
I
0.750
GSMUA_Achr10G12070_001
Musa acuminata
GSMUA_Achr10G12070_001
I
0.750
GSMUA_Achr6G08090_001
Musa acuminata
GSMUA_Achr6G08090_001
I
0.750
GRMZM2G352159
Zea mays
GRMZM2G352159
I
0.750
GRMZM2G006042
Zea mays
GRMZM2G006042
I
0.750
GLYMA05G38540
Glycine max
GLYMA05G38540
I
0.750
GLYMA08G01100
Glycine max
GLYMA08G01100
I
0.750
ORUFI04G14900
Oryza rufipogon
ORUFI04G14900
I
0.750
OLONG_022378
Oryza longistaminata
OLONG_022378
I
0.750
TCM_014743
Theobroma cacao
TCM_014743
I
0.750
TCM_008374
Theobroma cacao
TCM_008374
I
0.750
ARF2
Arabidopsis lyrata
scaffold_802850.1
I
0.750
Sb08g014320
Sorghum bicolor
Sb08g014320
I
0.750
TRIUR3_17755
Triticum urartu
TRIUR3_17755
I
0.750
VIT_01s0244g00150
Vitis vinifera
VIT_01s0244g00150
I
0.750
cassava17840.valid.m1
Manihot esculenta
cassava17840.valid.m1
I
0.750
cassava17839.valid.m1
Manihot esculenta
cassava17839.valid.m1
I
0.750
Pm024588
Prunus mume
Pm024588
I
0.750
Ca_05681
Cicer arietinum
Ca_05681
I
0.750
PRUPE_ppa001392mg
Prunus persica
PRUPE_ppa001392mg
I
0.750
Si021216m.g
Setaria italica
Si021216m.g
I
0.750
PGSC0003DMG400014452
Solanum tuberosum
PGSC0003DMG400014452
I
0.750
OS11G0523800
Oryza sativa
OS11G0523800
I
0.750
PGSC0003DMG400014179
Solanum tuberosum
PGSC0003DMG400014179
I
0.750
ORUFI11G16290
Oryza rufipogon
ORUFI11G16290
I
0.750
ARF9
Oryza sativa
OS04G0442000
I
0.750
ORUFI01G45980
Oryza rufipogon
ORUFI01G45980
I
0.736
BRADI4G17410
Brachypodium distachyon
BRADI4G17410
I
0.736
Pavir.Aa01676
Panicum virgatum
Pavir.Aa01676
I
0.736
ARF4
Oryza sativa
OS01G0927600
I
0.736
ORGLA01G0363100
Oryza glaberrima
ORGLA01G0363100
I
0.736
OPUNC04G11520
Oryza punctata
OPUNC04G11520
I
0.736
GRMZM2G702026
Zea mays
GRMZM2G702026
I
0.736
ONIVA01G48620
Oryza nivara
ONIVA01G48620
I
0.736
Si016562m.g
Setaria italica
Si016562m.g
I
0.736
GSMUA_Achr6G07390_001
Musa acuminata
GSMUA_Achr6G07390_001
I
0.736
GSMUA_Achr6G12780_001
Musa acuminata
GSMUA_Achr6G12780_001
I
0.736
BGIOSGA005099
Oryza indica
BGIOSGA005099
I
0.736
OMERI01G39560
Oryza meridionalis
OMERI01G39560
I
0.736
OBART01G42570
Oryza barthii
OBART01G42570
I
0.736
Eucgr.B03551
Eucalyptus grandis
Eucgr.B03551
I
0.736
POPTR_0014s12980
Populus trichocarpa
POPTR_0014s12980
I
0.736
OB02G28170
Oryza brachyantha
OB02G28170
I
0.736
Cucsa.303990
Cucumis sativus
Cucsa.303990
I
0.722
GRMZM2G137413
Zea mays
GRMZM2G137413
I
0.722
PDK_20s1869091g001
Phoenix dactylifera
PDK_20s1869091g001
I
0.722
Gorai.007G131900
Gossypium raimondii
Gorai.007G131900
I
0.722
PDK_20s1971021g001
Phoenix dactylifera
PDK_20s1971021g001
I
0.722
Bostr.15774s0314
Boechera stricta
Bostr.15774s0314
N
0.722
Pavir.Ab01961
Panicum virgatum
Pavir.Ab01961
I
0.722
GSMUA_AchrUn_randomG14770_001
Musa acuminata
GSMUA_AchrUn_randomG14770_001
I
0.722
GSMUA_Achr10G16170_001
Musa acuminata
GSMUA_Achr10G16170_001
I
0.722
evm.TU.contig_31756
Carica papaya
evm.TU.contig_31756
I
0.722
PRUPE_ppa022314mg
Prunus persica
PRUPE_ppa022314mg
I
0.722
MLOC_64596
Hordeum vulgare
MLOC_64596
I
0.722
BRADI2G46190
Brachypodium distachyon
BRADI2G46190
I
0.708
BRADI4G07470
Brachypodium distachyon
BRADI4G07470
I
0.708
Pm019941
Prunus mume
Pm019941
I
0.708
AMTR_s00021p00200760
Amborella trichopoda
AMTR_s00021p00200760
I
0.708
Cla011540
Citrullus lanatus
Cla011540
I
0.708
Pavir.Ga01750
Panicum virgatum
Pavir.Ga01750
I
0.708
Bostr.1040s0030
Boechera stricta
Bostr.1040s0030
I
0.708
Si009558m.g
Setaria italica
Si009558m.g
I
0.708
Sb06g017490
Sorghum bicolor
Sb06g017490
I
0.708
Lus10013942.g
Linum usitatissimum
Lus10013942.g
I
0.708
XM_002320618.1
Populus trichocarpa
POPTR_0020s00210
I
0.708
gene29771-v1.0-hybrid
Fragaria vesca
gene29771-v1.0-hybrid
I
0.708
TCM_004526
Theobroma cacao
TCM_004526
I
0.708
Pavir.Gb01617
Panicum virgatum
Pavir.Gb01617
I
0.708
Traes_2BL_1AED96909
Triticum aestivum
Traes_2BL_1AED96909
I
0.708
F775_27540
Aegilops tauschii
F775_27540
N
0.708
GLYMA07G32300
Glycine max
GLYMA07G32300
I
0.708
GLYMA13G24240
Glycine max
GLYMA13G24240
I
0.708
GRMZM2G378580
Zea mays
GRMZM2G378580
I
0.708
BRADI5G10950
Brachypodium distachyon
BRADI5G10950
I
0.708