BPC1 (Arabidopsis thaliana)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 AT2G01930 T024518_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC1
M06715_2.00
Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA

TCTCTCTCTCTCTCTCTCTCTCTC
Dap-seq
OMalley et al.(2016)
BPC1_col_a
(Direct) (Direct)
BPC1
M06716_2.00
Arabidopsis thaliana
RAGAGAGAGARAGAR

YTCTYTCTCTCTCTY
Dap-seq
OMalley et al.(2016)
BPC1_colamp_a
(Direct) (Direct)
BPC1
M09775_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BPC1_Q2
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G01930.1 BBR 1 283
AT2G01930.2 BBR 1 283

Links

Other BBR family TFs
Other Arabidopsis thaliana TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 1.000
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 1.000
BPC1 Arabidopsis lyrata fgenesh2_kg.5__107__AT2G01930.1 I 0.831
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.798
Carubv10017779m.g Capsella rubella Carubv10017779m.g I 0.787
Cagra.3834s0005 Capsella grandiflora Cagra.3834s0005 I 0.787
Bostr.0556s0021 Boechera stricta Bostr.0556s0021 I 0.771
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.762
BPC2 Arabidopsis lyrata fgenesh2_kg.1__1602__AT1G14685.1 I 0.700