BPC5 (Arabidopsis thaliana)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 AT4G38910 T024521_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC5
M06717_2.00
Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Dap-seq
OMalley et al.(2016)
BPC5_col_a
(Direct) (Direct)
BPC5
M06718_2.00
Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTYTCTCYYNBYYYY
Dap-seq
OMalley et al.(2016)
BPC5_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G38910.1 BBR 2 258
AT4G38910.2 BBR 1 283

Links

Other BBR family TFs
Other Arabidopsis thaliana TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27613.m000642 Ricinus communis 27613.m000642 N 0.000
29949.m000124 Ricinus communis 29949.m000124 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
SCL21 Arabidopsis thaliana AT2G04890 N 0.000
PAT1 Arabidopsis thaliana AT5G48150 N 0.000
Bo2g149670 Brassica oleracea Bo2g149670 N 0.000
Bo7g030310 Brassica oleracea Bo7g030310 N 0.000
Bo7g089080 Brassica oleracea Bo7g089080 N 0.000
Bo9g009240 Brassica oleracea Bo9g009240 N 0.000
Bo9g009260 Brassica oleracea Bo9g009260 N 0.000
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.000
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.000
Bra015156 Brassica rapa Bra015156 N 0.000
Bra020715 Brassica rapa Bra020715 N 0.000
Bra036185 Brassica rapa Bra036185 N 0.000
Bra037509 Brassica rapa Bra037509 N 0.000
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.000
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.000
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.000
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.000
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.000
Ca_09786 Cicer arietinum Ca_09786 N 0.000
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.000
Cla001429 Citrullus lanatus Cla001429 N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.000
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.000
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.000
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.000
PDK_20s1421311g003 Phoenix dactylifera PDK_20s1421311g003 N 0.000
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.000
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.000
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.000
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000