Bo3g149640 (Brassica oleracea)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 Bo3g149640 T024530_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.872 0.872
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.872 0.872
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g149640.1 BBR 1 47

Links

Other BBR family TFs
Other Brassica oleracea TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
Bo1g002230 Brassica oleracea Bo1g002230 N 0.936
Bo7g119540 Brassica oleracea Bo7g119540 I 0.915
BPC5 Arabidopsis thaliana AT4G38910 D 0.872
MTR_8g099780 Medicago truncatula MTR_8g099780 N 0.830
cassava24959.valid.m1 Manihot esculenta cassava24959.valid.m1 N 0.809
Ca_05693 Cicer arietinum Ca_05693 N 0.787
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.787
Lus10031078.g Linum usitatissimum Lus10031078.g N 0.787
GLYMA05G38430 Glycine max GLYMA05G38430 N 0.787
Aquca_007_00374 Aquilegia coerulea Aquca_007_00374 N 0.766
chr4.CM0175.470.nc Lotus japonicus chr4.CM0175.470.nc N 0.766
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 0.766
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.766
Sb10g002020 Sorghum bicolor Sb10g002020 N 0.766
Traes_7DS_FE8BC1125 Triticum aestivum Traes_7DS_FE8BC1125 N 0.745
MLOC_15776 Hordeum vulgare MLOC_15776 N 0.745
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I 0.745
AMTR_s00185p00053620 Amborella trichopoda AMTR_s00185p00053620 I 0.745